LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-345-5p


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Gene
miRNA
Score
DIANA Links
RP13-580B18.4
hsa-miR-345-5p
0.940
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000624628
Biotype: lincRNA
Gene id: ENSG00000279072
Gene Name: RP13-580B18.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
236-260
0.008
0
8mer
373-399
0.007
0
7mer
533-554
0.005
0
8mer
19165-19179
0.003
0
7mer
19924-19945
0.002
0
7mer
23286-23308
0.002
Not Conserved
7mer
10408-10430
0.002
0
7mer
3937-3959
0.002
0
7mer
21712-21734
0.001
Not Conserved
7mer
18763-18786
0.001
Not Conserved
7mer
19028-19052
0.001
0
7mer
3152-3174
0.001
Not Conserved
7mer
20236-20256
0.001
Not Conserved
7mer
5679-5701
0.001
Not Conserved
7mer
14239-14261
0.001
Not Conserved
7mer
17817-17839
0.001
Not Conserved
7mer
7469-7491
0.001
Not Conserved
7mer
12390-12412
0.001
Not Conserved
7mer
8570-8592
0.001
Not Conserved
7mer
15022-15044
0.001
Not Conserved
7mer
13175-13197
0.001
Not Conserved
7mer
9355-9377
0.001
Not Conserved
7mer
16764-16786
0.001
Not Conserved
7mer
6684-6706
0.001
Not Conserved
6mer
22738-22761
0.001
Not Conserved
7mer
11193-11215
0.001
Not Conserved
7mer
18606-18628
0.001
Not Conserved
7mer
4894-4916
0.001
Not Conserved
7mer
15979-16001
0.001
Not Conserved
6mer
13789-13815
0.001
Not Conserved
6mer
11759-11785
0.001
Not Conserved
6mer
13741-13767
0.000
Not Conserved
SNHG15
hsa-miR-345-5p
0.938
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000584327
Biotype: lincRNA
Gene id: ENSG00000232956
Gene Name: SNHG15
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
69-87
0.055
2
PWRN2
hsa-miR-345-5p
0.937
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000567246
Biotype: lincRNA
Gene id: ENSG00000260551
Gene Name: PWRN2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
4230-4256
0.055
1
SNHG15
hsa-miR-345-5p
0.931
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000438705
Biotype: lincRNA
Gene id: ENSG00000232956
Gene Name: SNHG15
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
121-139
0.053
2
AC002429.5
hsa-miR-345-5p
0.928
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000417881
Biotype: antisense
Gene id: ENSG00000236197
Gene Name: AC002429.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2454-2477
0.048
6
7mer
1509-1525
0.003
0
6mer
1355-1377
0.001
0
ZBED3-AS1
hsa-miR-345-5p
0.927
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_024398.1
Biotype: antisense
Gene id: NR_024398.1 (gene)
Gene Name: ZBED3-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
741-756
0.043
2
7mer
817-833
0.006
1
6mer
828-841
0.003
0
XLOC_002216
hsa-miR-345-5p
0.924
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004342
Biotype: transcript isomorph
Gene id: XLOC_002216
Gene Name: XLOC_002216
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
299-325
0.018
1
6mer
101-126
0.017
1
6mer
196-222
0.016
1
XLOC_013268
hsa-miR-345-5p
0.924
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027230
Biotype: transcript isomorph
Gene id: XLOC_013268
Gene Name: XLOC_013268
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
657-674
0.052
0
LOC388692
hsa-miR-345-5p
0.924
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_027002.1
Biotype: lincRNA
Gene id: NR_027002.1 (gene)
Gene Name: LOC388692
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
515-534
0.009
0
7mer
1702-1720
0.007
2
7mer
4637-4653
0.005
0
8mer
3095-3118
0.005
1
6mer
11309-11331
0.003
1
6mer
9639-9658
0.003
1
6mer
11143-11163
0.002
1
6mer
6201-6217
0.002
1
6mer
9294-9316
0.002
2
7mer
3006-3026
0.002
1
6mer
1260-1287
0.001
0
RP4-717I23.3
hsa-miR-345-5p
0.924
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000424517
Biotype: antisense
Gene id: ENSG00000223745
Gene Name: RP4-717I23.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
68-93
0.051
4
RP11-359G22.2
hsa-miR-345-5p
0.923
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000441568
Biotype: lincRNA
Gene id: ENSG00000230400
Gene Name: RP11-359G22.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
148-174
0.046
2
6mer
893-905
0.003
1
6mer
2089-2113
0.003
0
RP3-395M20.8
hsa-miR-345-5p
0.921
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000448624
Biotype: lincRNA
Gene id: ENSG00000238164
Gene Name: RP3-395M20.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
647-667
0.051
1
RP4-717I23.3
hsa-miR-345-5p
0.920
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000457025
Biotype: antisense
Gene id: ENSG00000223745
Gene Name: RP4-717I23.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
105-130
0.051
4
RP1-60O19.1
hsa-miR-345-5p
0.920
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000607758
Biotype: retained_intron
Gene id: ENSG00000235142
Gene Name: RP1-60O19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
35-54
0.035
Not Conserved
9mer
258-273
0.016
0
RP11-44F21.3
hsa-miR-345-5p
0.918
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000508031
Biotype: antisense
Gene id: ENSG00000249717
Gene Name: RP11-44F21.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2293-2307
0.047
7
6mer
2079-2090
0.003
1
ZBED3-AS1
hsa-miR-345-5p
0.912
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000513591
Biotype: antisense
Gene id: ENSG00000250802
Gene Name: ZBED3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1164-1179
0.041
2
7mer
1240-1256
0.005
1
6mer
1251-1264
0.002
0
XLOC_010051
hsa-miR-345-5p
0.911
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020759
Biotype: transcript isomorph
Gene id: XLOC_010051
Gene Name: XLOC_010051
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
115-131
0.049
1
RP11-554L12.1
hsa-miR-345-5p
0.910
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000553029
Biotype: lincRNA
Gene id: ENSG00000258144
Gene Name: RP11-554L12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
129-145
0.048
1
RP11-390N6.1
hsa-miR-345-5p
0.908
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548384
Biotype: antisense
Gene id: ENSG00000257191
Gene Name: RP11-390N6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
156-181
0.034
3
7mer
620-644
0.014
0
RP4-717I23.3
hsa-miR-345-5p
0.907
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000429859
Biotype: antisense
Gene id: ENSG00000223745
Gene Name: RP4-717I23.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
69-94
0.048
4
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