LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-345-5p


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Gene
miRNA
Score
DIANA Links
XLOC_002214
hsa-miR-345-5p
0.968
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004339
Biotype: transcript isomorph
Gene id: XLOC_002214
Gene Name: XLOC_002214
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
418-444
0.016
1
6mer
1819-1845
0.014
1
6mer
1612-1630
0.012
1
6mer
1502-1527
0.008
1
6mer
1923-1948
0.006
0
6mer
1716-1736
0.006
0
6mer
1399-1425
0.004
0
PWRN1
hsa-miR-345-5p
0.967
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000569908
Biotype: lincRNA
Gene id: ENSG00000259905
Gene Name: PWRN1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1175-1192
0.037
0
6mer
44-61
0.014
1
7mer
80-105
0.011
0
6mer
1384-1398
0.005
Not Conserved
RP1-60O19.1
hsa-miR-345-5p
0.966
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000430094
Biotype: lincRNA
Gene id: ENSG00000235142
Gene Name: RP1-60O19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
155-175
0.066
2
ALKBH3-AS1
hsa-miR-345-5p
0.966
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000528285
Biotype: antisense
Gene id: ENSG00000244926
Gene Name: ALKBH3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
417-443
0.065
9
RP11-385J1.2
hsa-miR-345-5p
0.966
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000451742
Biotype: antisense
Gene id: ENSG00000237978
Gene Name: RP11-385J1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
509-525
0.065
6
MIR378D2
hsa-miR-345-5p
0.965
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000607097
Biotype: lincRNA
Gene id: ENSG00000264448
Gene Name: MIR378D2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
350-371
0.059
4
6mer
63-78
0.006
2
MIR6818
hsa-miR-345-5p
0.964
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624945
Biotype: antisense
Gene id: ENSG00000279159
Gene Name: MIR6818
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
45474-45495
0.011
4
8mer
13503-13526
0.005
2
7mer
38464-38480
0.004
1
7mer
16382-16402
0.004
2
7mer
32233-32253
0.004
1
7mer
25410-25428
0.003
2
7mer
37385-37408
0.003
2
8mer
28282-28300
0.003
4
6mer
34459-34486
0.003
9
8mer
14587-14606
0.003
1
7mer
37519-37532
0.003
0
6mer
42777-42794
0.003
7
7mer
21926-21948
0.003
1
7mer
8327-8351
0.002
3
6mer
18857-18869
0.002
4
6mer
6001-6022
0.002
3
6mer
9056-9076
0.001
3
6mer
24216-24233
0.001
1
6mer
14957-14976
0.001
1
6mer
13630-13652
0.001
2
8mer
14572-14592
0.001
0
6mer
12422-12438
0.001
0
LINC01140
hsa-miR-345-5p
0.964
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000490006
Biotype: lincRNA
Gene id: ENSG00000267272
Gene Name: LINC01140
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
713-735
0.038
9
7mer
404-415
0.015
9
6mer
981-996
0.006
6
6mer
288-302
0.005
4
GLIDR
hsa-miR-345-5p
0.955
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000476224
Biotype: lincRNA
Gene id: ENSG00000170161
Gene Name: GLIDR
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
26-43
0.058
0
6mer
1348-1375
0.003
Not Conserved
LINC01365
hsa-miR-345-5p
0.954
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000512219
Biotype: lincRNA
Gene id: ENSG00000250772
Gene Name: LINC01365
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
324-344
0.060
3
MIR4534
hsa-miR-345-5p
0.952
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623111
Biotype: sense_overlapping
Gene id: ENSG00000279010
Gene Name: MIR4534
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
17774-17796
0.011
1
7mer
9259-9279
0.008
4
7mer
54240-54265
0.006
0
7mer
40959-40977
0.004
Not Conserved
7mer
51176-51193
0.004
1
6mer
47874-47901
0.003
7
6mer
50309-50330
0.002
8
8mer
22869-22881
0.002
1
7mer
31753-31774
0.002
0
7mer
31572-31592
0.002
2
6mer
19538-19554
0.002
5
6mer
45074-45098
0.001
1
7mer
5256-5273
0.001
1
6mer
25009-25026
0.001
6
7mer
19918-19938
0.001
2
6mer
2429-2448
0.001
0
6mer
20158-20184
0.001
0
6mer
39029-39052
0.001
2
6mer
12684-12709
0.001
Not Conserved
6mer
32338-32363
0.001
1
7mer
31802-31821
0.001
1
6mer
51016-51036
0.001
Not Conserved
6mer
41062-41083
0.001
1
6mer
51324-51340
0.001
1
SACS-AS1
hsa-miR-345-5p
0.950
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000443092
Biotype: lincRNA
Gene id: ENSG00000229558
Gene Name: SACS-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1708-1729
0.059
7
RP11-809F4.3
hsa-miR-345-5p
0.949
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000562617
Biotype: lincRNA
Gene id: ENSG00000260217
Gene Name: RP11-809F4.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1894-1912
0.059
1
RP1-60O19.1
hsa-miR-345-5p
0.949
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000602934
Biotype: lincRNA
Gene id: ENSG00000235142
Gene Name: RP1-60O19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2147-2167
0.058
2
RP3-323A16.1
hsa-miR-345-5p
0.948
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623959
Biotype: antisense
Gene id: ENSG00000279184
Gene Name: RP3-323A16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
32966-32980
0.011
0
7mer
45652-45667
0.008
3
7mer
19502-19524
0.007
1
7mer
10677-10688
0.004
1
6mer
44122-44135
0.003
6
7mer
13404-13420
0.002
1
6mer
25053-25077
0.002
1
6mer
41522-41541
0.002
2
7mer
51295-51306
0.002
1
6mer
9523-9544
0.002
2
7mer
17208-17229
0.002
0
7mer
36883-36902
0.002
1
6mer
43208-43233
0.002
1
6mer
15580-15600
0.002
2
6mer
49141-49156
0.002
0
6mer
51273-51296
0.002
1
6mer
27440-27444
0.001
1
6mer
50255-50269
0.001
1
6mer
9934-9956
0.001
1
LINC01365
hsa-miR-345-5p
0.948
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503266
Biotype: lincRNA
Gene id: ENSG00000250772
Gene Name: LINC01365
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
179-199
0.058
3
XLOC_009913
hsa-miR-345-5p
0.945
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020238
Biotype: transcript isomorph
Gene id: XLOC_009913
Gene Name: XLOC_009913
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
24-42
0.057
6
LINC00945
hsa-miR-345-5p
0.944
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000453716
Biotype: lincRNA
Gene id: ENSG00000232539
Gene Name: LINC00945
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
290-313
0.054
8
6mer
304-327
0.003
1
LINC01043
hsa-miR-345-5p
0.943
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000565936
Biotype: lincRNA
Gene id: ENSG00000260343
Gene Name: LINC01043
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
261-278
0.016
Not Conserved
8mer
5518-5542
0.012
0
8mer
4242-4256
0.007
Not Conserved
8mer
2606-2627
0.006
Not Conserved
8mer
1250-1266
0.004
Not Conserved
6mer
2398-2423
0.002
Not Conserved
6mer
4638-4663
0.002
0
6mer
839-856
0.002
Not Conserved
6mer
3722-3746
0.001
0
6mer
5939-5965
0.001
Not Conserved
6mer
2196-2219
0.001
Not Conserved
6mer
4882-4905
0.001
Not Conserved
6mer
3789-3814
0.001
Not Conserved
6mer
3857-3882
0.001
Not Conserved
XLOC_014188
hsa-miR-345-5p
0.940
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029538
Biotype: transcript isomorph
Gene id: XLOC_014188
Gene Name: XLOC_014188
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
45-63
0.056
0
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