LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-324-3p


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Gene
miRNA
Score
DIANA Links
LINC01004
hsa-miR-324-3p
0.898
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_039981.2
Biotype: lincRNA
Gene id: NR_039981.2 (gene)
Gene Name: LINC01004
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
7266-7283
0.030
1
7mer
9303-9320
0.007
0
7mer
5206-5221
0.004
1
7mer
2448-2467
0.003
Not Conserved
6mer
8039-8059
0.003
2
RP5-1021I20.6
hsa-miR-324-3p
0.898
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000602874
Biotype: sense_intronic
Gene id: ENSG00000270140
Gene Name: RP5-1021I20.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
195-219
0.027
1
7mer
141-161
0.020
2
XLOC_013333
hsa-miR-324-3p
0.897
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027356
Biotype: transcript isomorph
Gene id: XLOC_013333
Gene Name: XLOC_013333
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2252-2270
0.041
1
6mer
1928-1948
0.006
1
NOP14-AS1
hsa-miR-324-3p
0.897
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000512712
Biotype: antisense
Gene id: ENSG00000249673
Gene Name: NOP14-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
3071-3095
0.015
0
8mer
2129-2152
0.008
1
7mer
900-924
0.006
1
8mer
1802-1816
0.005
1
7mer
2119-2141
0.005
0
7mer
1665-1678
0.003
1
6mer
1148-1175
0.003
1
6mer
2853-2877
0.002
1
AC005944.2
hsa-miR-324-3p
0.897
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000592758
Biotype: antisense
Gene id: ENSG00000267469
Gene Name: AC005944.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
402-425
0.046
1
LINC01134
hsa-miR-324-3p
0.894
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000413332
Biotype: lincRNA
Gene id: ENSG00000236423
Gene Name: LINC01134
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
531-553
0.022
1
8mer
582-597
0.015
1
7mer
181-198
0.009
0
RP11-539L10.2
hsa-miR-324-3p
0.893
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000499502
Biotype: lincRNA
Gene id: ENSG00000246526
Gene Name: RP11-539L10.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1783-1797
0.045
1
THTPA
hsa-miR-324-3p
0.892
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554403
Biotype: retained_intron
Gene id: ENSG00000157306
Gene Name: THTPA
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
432-454
0.032
5
8mer
2212-2225
0.009
0
6mer
1003-1013
0.004
6
LOC100506639
hsa-miR-324-3p
0.892
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_102752.1
Biotype: sense
Gene id: NR_102752.1 (gene)
Gene Name: LOC100506639
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1272-1293
0.038
0
6mer
32-48
0.007
0
RP11-360A18.2
hsa-miR-324-3p
0.891
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000561476
Biotype: lincRNA
Gene id: ENSG00000261432
Gene Name: RP11-360A18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1901-1921
0.030
1
8mer
160-181
0.015
0
MIR99AHG
hsa-miR-324-3p
0.891
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000419952
Biotype: lincRNA
Gene id: ENSG00000215386
Gene Name: MIR99AHG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
186-211
0.045
7
XLOC_009892
hsa-miR-324-3p
0.890
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020576
Biotype: transcript isomorph
Gene id: XLOC_009892
Gene Name: XLOC_009892
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
312-331
0.045
3
LINC00115
hsa-miR-324-3p
0.888
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000473798
Biotype: lincRNA
Gene id: ENSG00000225880
Gene Name: LINC00115
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
637-663
0.037
1
6mer
933-952
0.006
1
6mer
401-418
0.002
Not Conserved
RP11-66B24.4
hsa-miR-324-3p
0.888
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560351
Biotype: antisense
Gene id: ENSG00000259583
Gene Name: RP11-66B24.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
190-206
0.028
0
7mer
3424-3441
0.014
0
7mer
197-214
0.003
1
RP11-215H22.1
hsa-miR-324-3p
0.888
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000561816
Biotype: lincRNA
Gene id: ENSG00000261340
Gene Name: RP11-215H22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
479-493
0.032
0
8mer
1857-1879
0.013
2
RP11-6N17.1
hsa-miR-324-3p
0.887
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000581213
Biotype: lincRNA
Gene id: ENSG00000264243
Gene Name: RP11-6N17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
567-590
0.044
6
XLOC_008917
hsa-miR-324-3p
0.887
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018031
Biotype: transcript isomorph
Gene id: XLOC_008917
Gene Name: XLOC_008917
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
354-376
0.044
0
RP1-178F10.3
hsa-miR-324-3p
0.886
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577764
Biotype: lincRNA
Gene id: ENSG00000267350
Gene Name: RP1-178F10.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1003-1021
0.031
1
7mer
1179-1201
0.008
2
6mer
1397-1419
0.006
2
XLOC_012222
hsa-miR-324-3p
0.885
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025121
Biotype: transcript isomorph
Gene id: XLOC_012222
Gene Name: XLOC_012222
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
567-590
0.044
6
RP11-649A18.4
hsa-miR-324-3p
0.885
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000579554
Biotype: sense_intronic
Gene id: ENSG00000263786
Gene Name: RP11-649A18.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
266-271
0.035
4
6mer
106-132
0.009
3
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