LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-324-3p


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Gene
miRNA
Score
DIANA Links
RP11-740P5.3
hsa-miR-324-3p
0.922
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000429389
Biotype: lincRNA
Gene id: ENSG00000231630
Gene Name: RP11-740P5.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
79-92
0.051
1
LEMD1-AS1
hsa-miR-324-3p
0.922
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000447832
Biotype: antisense
Gene id: ENSG00000226235
Gene Name: LEMD1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2362-2384
0.047
0
6mer
318-337
0.004
Not Conserved
LL22NC03-22D1.1
hsa-miR-324-3p
0.922
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624601
Biotype: lincRNA
Gene id: ENSG00000279003
Gene Name: LL22NC03-22D1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
11156-11179
0.017
1
8mer
27565-27582
0.007
1
7mer
18992-19012
0.005
2
6mer
1452-1472
0.003
7
6mer
25886-25905
0.002
2
6mer
9438-9447
0.002
1
6mer
1872-1882
0.002
1
6mer
25204-25218
0.001
2
6mer
7123-7142
0.001
2
6mer
11802-11827
0.001
0
7mer
5558-5573
0.001
2
6mer
24816-24839
0.001
0
6mer
3809-3823
0.001
0
6mer
12359-12379
0.001
0
7mer
10379-10397
0.001
0
6mer
21712-21729
0.001
0
6mer
7006-7022
0.001
1
6mer
12458-12481
0.001
1
RP11-1E6.1
hsa-miR-324-3p
0.921
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000508352
Biotype: retained_intron
Gene id: ENSG00000250657
Gene Name: RP11-1E6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
122-139
0.051
1
AC012613.2
hsa-miR-324-3p
0.921
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000523176
Biotype: antisense
Gene id: ENSG00000253406
Gene Name: AC012613.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
378-401
0.037
2
7mer
3320-3347
0.004
1
6mer
3693-3714
0.003
7
7mer
2294-2312
0.003
1
6mer
230-249
0.002
1
7mer
1167-1189
0.002
2
RP5-1086K13.1
hsa-miR-324-3p
0.920
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000456414
Biotype: lincRNA
Gene id: ENSG00000224950
Gene Name: RP5-1086K13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
436-460
0.046
1
7mer
2241-2261
0.004
0
6mer
1614-1638
0.001
1
XLOC_002897
hsa-miR-324-3p
0.920
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006290
Biotype: transcript isomorph
Gene id: XLOC_002897
Gene Name: XLOC_002897
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
228-248
0.051
0
XLOC_007895
hsa-miR-324-3p
0.920
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016506
Biotype: transcript isomorph
Gene id: XLOC_007895
Gene Name: XLOC_007895
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7697-7714
0.026
1
7mer
4150-4176
0.013
3
6mer
8716-8735
0.002
0
7mer
3209-3228
0.001
1
6mer
6815-6831
0.001
1
6mer
3464-3491
0.001
0
7mer
5105-5132
0.001
1
6mer
1305-1330
0.001
0
7mer
3277-3298
0.001
Not Conserved
6mer
3854-3874
0.001
1
6mer
2817-2841
0.001
1
6mer
4769-4792
0.001
1
LA16c-313D11.9
hsa-miR-324-3p
0.918
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000571933
Biotype: antisense
Gene id: ENSG00000260394
Gene Name: LA16c-313D11.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1052-1070
0.039
1
8mer
224-239
0.008
0
7mer
635-660
0.003
0
6mer
970-989
0.001
0
LINC01159
hsa-miR-324-3p
0.916
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000433433
Biotype: lincRNA
Gene id: ENSG00000229743
Gene Name: LINC01159
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
267-290
0.030
2
8mer
1706-1722
0.013
1
6mer
70-87
0.004
3
7mer
2059-2078
0.002
0
6mer
1425-1450
0.001
Not Conserved
RP4-671O14.6
hsa-miR-324-3p
0.915
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624919
Biotype: sense_overlapping
Gene id: ENSG00000280434
Gene Name: RP4-671O14.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5901-5926
0.015
0
7mer
13893-13913
0.011
1
7mer
5016-5033
0.005
1
7mer
4101-4120
0.004
0
7mer
10835-10854
0.003
0
9mer
3266-3288
0.002
0
8mer
8036-8062
0.002
1
7mer
3572-3595
0.002
2
6mer
11793-11805
0.002
1
6mer
7579-7600
0.001
1
6mer
12091-12118
0.001
1
6mer
8420-8443
0.001
2
6mer
4127-4151
0.000
0
XLOC_001199
hsa-miR-324-3p
0.914
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001815
Biotype: transcript isomorph
Gene id: XLOC_001199
Gene Name: XLOC_001199
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
111-129
0.026
4
6mer
236-258
0.009
6
8mer
852-869
0.008
0
7mer
4233-4248
0.006
0
7mer
3080-3104
0.001
0
6mer
3091-3114
0.001
Not Conserved
LA16c-306A4.2
hsa-miR-324-3p
0.914
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564460
Biotype: sense_intronic
Gene id: ENSG00000260316
Gene Name: LA16c-306A4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
220-245
0.010
0
7mer
469-484
0.006
1
7mer
390-411
0.005
0
7mer
4407-4431
0.004
0
7mer
4545-4569
0.003
0
7mer
2363-2379
0.003
1
7mer
4639-4665
0.002
0
6mer
4592-4616
0.002
0
7mer
4130-4154
0.002
Not Conserved
6mer
4177-4204
0.002
0
7mer
3898-3922
0.001
0
6mer
3945-3972
0.001
0
7mer
4361-4387
0.001
Not Conserved
7mer
3851-3875
0.001
0
7mer
4315-4341
0.001
Not Conserved
7mer
3666-3692
0.001
Not Conserved
6mer
3712-3739
0.001
0
7mer
3805-3831
0.001
Not Conserved
7mer
3759-3785
0.001
Not Conserved
7mer
3620-3646
0.001
Not Conserved
7mer
2846-2867
0.001
Not Conserved
6mer
3166-3191
0.001
0
RP11-138H8.8
hsa-miR-324-3p
0.913
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000621778
Biotype: sense_intronic
Gene id: ENSG00000274297
Gene Name: RP11-138H8.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
517-541
0.049
1
RP11-563N12.2
hsa-miR-324-3p
0.913
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521139
Biotype: lincRNA
Gene id: ENSG00000253164
Gene Name: RP11-563N12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
10-27
0.049
1
RP11-197N18.2
hsa-miR-324-3p
0.913
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000540866
Biotype: retained_intron
Gene id: ENSG00000256028
Gene Name: RP11-197N18.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
143-159
0.023
2
8mer
2211-2227
0.008
3
7mer
2572-2593
0.007
1
7mer
5508-5532
0.006
1
8mer
1211-1227
0.003
1
6mer
2903-2924
0.001
2
6mer
3559-3581
0.001
0
6mer
3654-3674
0.000
1
AC005550.5
hsa-miR-324-3p
0.913
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000438923
Biotype: lincRNA
Gene id: ENSG00000225974
Gene Name: AC005550.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
115-137
0.049
1
RP11-309H21.3
hsa-miR-324-3p
0.913
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000563320
Biotype: lincRNA
Gene id: ENSG00000261642
Gene Name: RP11-309H21.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
93-116
0.035
0
7mer
18-40
0.014
0
RP1-39J2.1
hsa-miR-324-3p
0.912
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000568306
Biotype: lincRNA
Gene id: ENSG00000260771
Gene Name: RP1-39J2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
460-477
0.038
1
7mer
483-503
0.009
0
7mer
58-76
0.002
0
RP1-60O19.1
hsa-miR-324-3p
0.912
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000415714
Biotype: lincRNA
Gene id: ENSG00000235142
Gene Name: RP1-60O19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
122-144
0.049
1
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