LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-324-3p


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Gene
miRNA
Score
DIANA Links
XLOC_013611
hsa-miR-324-3p
0.937
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00027982
Biotype: transcript isomorph
Gene id: XLOC_013611
Gene Name: XLOC_013611
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
84-98
0.012
0
7mer
180-194
0.011
0
7mer
116-130
0.010
0
7mer
148-162
0.010
0
6mer
52-66
0.003
0
6mer
405-425
0.003
0
8mer+mismatch
972-986
0.003
0
6mer
271-290
0.002
Not Conserved
6mer
1623-1646
0.001
0
RP11-395B7.7
hsa-miR-324-3p
0.937
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000564977
Biotype: sense_overlapping
Gene id: ENSG00000260336
Gene Name: RP11-395B7.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3275-3299
0.040
5
8mer
559-582
0.008
0
7mer
775-790
0.003
1
6mer
3606-3623
0.002
0
7mer
1452-1478
0.002
Not Conserved
XLOC_011119
hsa-miR-324-3p
0.935
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00023171
Biotype: transcript isomorph
Gene id: XLOC_011119
Gene Name: XLOC_011119
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
919-934
0.054
1
TUB-AS1
hsa-miR-324-3p
0.933
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000506601
Biotype: sense_intronic
Gene id: ENSG00000248332
Gene Name: TUB-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1577-1591
0.054
3
RP1-60O19.1
hsa-miR-324-3p
0.932
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000433965
Biotype: lincRNA
Gene id: ENSG00000235142
Gene Name: RP1-60O19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
117-139
0.053
1
RP3-333B15.6
hsa-miR-324-3p
0.932
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000615088
Biotype: lincRNA
Gene id: ENSG00000276638
Gene Name: RP3-333B15.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
200-219
0.053
0
RP4-734G22.3
hsa-miR-324-3p
0.931
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000606802
Biotype: antisense
Gene id: ENSG00000272078
Gene Name: RP4-734G22.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7302-7320
0.014
4
8mer
2512-2528
0.009
2
8mer
443-467
0.007
3
8mer+wobble
3044-3063
0.004
1
8mer
1746-1766
0.003
1
7mer
819-832
0.003
1
6mer
420-434
0.003
8
6mer
1455-1472
0.002
9
7mer
5186-5205
0.001
1
7mer
3703-3722
0.001
1
6mer
1186-1212
0.001
3
6mer
6982-6998
0.001
2
7mer
4729-4755
0.001
2
6mer
6295-6317
0.001
0
6mer
6678-6701
0.001
0
6mer
5859-5882
0.000
1
LOC100506188
hsa-miR-324-3p
0.929
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_109774.1
Biotype: lincRNA
Gene id: NR_109774.1 (gene)
Gene Name: LOC100506188
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1245-1262
0.041
3
8mer+mismatch
1128-1151
0.004
1
6mer
1226-1246
0.004
1
6mer
737-753
0.003
1
CASC7
hsa-miR-324-3p
0.929
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000560295
Biotype: lincRNA
Gene id: ENSG00000259758
Gene Name: CASC7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
978-995
0.039
6
6mer
1435-1455
0.003
4
6mer
7699-7724
0.002
4
6mer
7919-7928
0.002
3
6mer
3876-3902
0.002
0
6mer
2947-2970
0.002
0
6mer
6335-6355
0.001
3
6mer
8357-8378
0.001
0
BAALC-AS1
hsa-miR-324-3p
0.929
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000499522
Biotype: antisense
Gene id: ENSG00000247081
Gene Name: BAALC-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1102-1121
0.046
2
6mer
909-933
0.004
2
6mer
593-619
0.002
0
SNHG14
hsa-miR-324-3p
0.928
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000551631
Biotype: antisense
Gene id: ENSG00000224078
Gene Name: SNHG14
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3609-3635
0.053
1
RP1-37N7.1
hsa-miR-324-3p
0.928
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000579352
Biotype: antisense
Gene id: ENSG00000264177
Gene Name: RP1-37N7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4600-4620
0.019
1
8mer
4527-4552
0.011
1
8mer
221-236
0.010
0
8mer
673-697
0.005
Not Conserved
6mer
277-299
0.004
0
8mer
656-675
0.002
Not Conserved
7mer
504-518
0.001
Not Conserved
6mer
763-782
0.001
Not Conserved
6mer
3073-3094
0.000
0
LINC00237
hsa-miR-324-3p
0.928
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000593272
Biotype: lincRNA
Gene id: ENSG00000225127
Gene Name: LINC00237
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
529-547
0.052
4
RP11-563N12.2
hsa-miR-324-3p
0.926
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519159
Biotype: lincRNA
Gene id: ENSG00000253164
Gene Name: RP11-563N12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
56-73
0.047
1
6mer
28-44
0.005
0
INHBA-AS1
hsa-miR-324-3p
0.926
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_027118.1
Biotype: antisense
Gene id: NR_027118.1 (gene)
Gene Name: INHBA-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2953-2968
0.042
1
6mer
2529-2540
0.005
2
7mer
1266-1285
0.004
0
LINC00237
hsa-miR-324-3p
0.925
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000420705
Biotype: lincRNA
Gene id: ENSG00000225127
Gene Name: LINC00237
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
282-300
0.052
4
RP11-554D15.3
hsa-miR-324-3p
0.925
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000436672
Biotype: lincRNA
Gene id: ENSG00000272243
Gene Name: RP11-554D15.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
93-116
0.038
Not Conserved
8mer
384-409
0.014
Not Conserved
AC012314.8
hsa-miR-324-3p
0.924
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000452097
Biotype: antisense
Gene id: ENSG00000237017
Gene Name: AC012314.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3419-3442
0.030
8
7mer
3143-3165
0.009
1
8mer
549-564
0.007
1
9mer
1117-1133
0.004
1
6mer
2033-2045
0.001
1
6mer
3113-3128
0.001
0
RP3-512E2.2
hsa-miR-324-3p
0.924
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000445838
Biotype: antisense
Gene id: ENSG00000226455
Gene Name: RP3-512E2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
494-519
0.048
1
6mer
338-353
0.004
5
RP11-50C13.2
hsa-miR-324-3p
0.922
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561202
Biotype: sense_intronic
Gene id: ENSG00000259476
Gene Name: RP11-50C13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
395-413
0.041
1
9mer
1413-1434
0.010
Not Conserved
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