LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-324-3p


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Gene
miRNA
Score
DIANA Links
RP11-1079K10.4
hsa-miR-324-3p
0.968
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000506504
Biotype: antisense
Gene id: ENSG00000250186
Gene Name: RP11-1079K10.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
744-768
0.032
8
7mer
285-311
0.022
4
7mer
43-63
0.012
6
LINC00475
hsa-miR-324-3p
0.968
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000421234
Biotype: lincRNA
Gene id: ENSG00000225511
Gene Name: LINC00475
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
12-34
0.066
0
CTD-3193K9.3
hsa-miR-324-3p
0.968
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000592440
Biotype: antisense
Gene id: ENSG00000267765
Gene Name: CTD-3193K9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
409-432
0.055
3
6mer
619-642
0.006
6
7mer
685-696
0.005
1
RP11-298I3.4
hsa-miR-324-3p
0.963
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556503
Biotype: antisense
Gene id: ENSG00000258457
Gene Name: RP11-298I3.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
748-761
0.028
0
8mer
81-97
0.022
2
8mer
68-89
0.013
4
6mer
56-82
0.002
1
XLOC_013601
hsa-miR-324-3p
0.963
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028261
Biotype: transcript isomorph
Gene id: XLOC_013601
Gene Name: XLOC_013601
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Placenta Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
9545-9563
0.017
1
8mer
8881-8895
0.007
1
8mer
6117-6142
0.007
Not Conserved
9mer
9809-9828
0.006
0
7mer
317-338
0.005
1
6mer
294-318
0.004
1
6mer
7866-7889
0.002
2
6mer
227-243
0.002
1
7mer
4325-4350
0.002
1
8mer
1421-1445
0.002
Not Conserved
7mer
348-373
0.002
0
7mer
4205-4227
0.002
1
6mer
5436-5461
0.001
1
8mer+mismatch
3244-3261
0.001
1
6mer
3414-3437
0.001
1
6mer
4147-4166
0.001
1
6mer
8935-8951
0.001
1
6mer
1250-1266
0.001
0
6mer
3708-3729
0.001
Not Conserved
6mer
5945-5968
0.001
0
6mer
4376-4389
0.000
1
AC074391.1
hsa-miR-324-3p
0.963
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000414811
Biotype: lincRNA
Gene id: ENSG00000204929
Gene Name: AC074391.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
205-224
0.064
1
XLOC_013268
hsa-miR-324-3p
0.963
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027230
Biotype: transcript isomorph
Gene id: XLOC_013268
Gene Name: XLOC_013268
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
723-740
0.062
0
6mer
711-731
0.002
Not Conserved
XLOC_003235
hsa-miR-324-3p
0.962
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006634
Biotype: transcript isomorph
Gene id: XLOC_003235
Gene Name: XLOC_003235
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6174-6200
0.056
1
6mer
6380-6400
0.003
1
6mer
4976-4988
0.002
0
6mer
2317-2342
0.001
1
6mer
1637-1662
0.001
1
6mer
4970-4988
0.001
1
FLJ31662
hsa-miR-324-3p
0.962
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000424943
Biotype: lincRNA
Gene id: ENSG00000233907
Gene Name: FLJ31662
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
610-626
0.022
1
8mer
2520-2545
0.021
1
7mer
2415-2430
0.014
1
7mer
1808-1833
0.004
0
6mer
2549-2571
0.003
0
RP11-510M2.2
hsa-miR-324-3p
0.962
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000500612
Biotype: antisense
Gene id: ENSG00000247324
Gene Name: RP11-510M2.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2679-2702
0.034
1
8mer
93-108
0.030
0
AC093390.1
hsa-miR-324-3p
0.962
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000426976
Biotype: antisense
Gene id: ENSG00000232057
Gene Name: AC093390.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3045-3063
0.063
1
TEX26-AS1
hsa-miR-324-3p
0.962
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000411835
Biotype: antisense
Gene id: ENSG00000224743
Gene Name: TEX26-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
890-906
0.063
1
RP11-529E10.6
hsa-miR-324-3p
0.961
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000564650
Biotype: sense_overlapping
Gene id: ENSG00000261643
Gene Name: RP11-529E10.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
350-364
0.063
0
LINC01405
hsa-miR-324-3p
0.960
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000553177
Biotype: lincRNA
Gene id: ENSG00000185847
Gene Name: LINC01405
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
394-411
0.060
2
6mer
307-326
0.003
1
XLOC_014172
hsa-miR-324-3p
0.959
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029529
Biotype: transcript isomorph
Gene id: XLOC_014172
Gene Name: XLOC_014172
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
630-646
0.038
0
8mer
2235-2258
0.011
3
8mer+wobble
3117-3136
0.005
1
7mer
1659-1681
0.004
2
8mer+mismatch
3998-4019
0.002
0
6mer
2588-2614
0.001
0
6mer
2250-2275
0.001
2
6mer
3253-3276
0.001
0
RP11-40C11.2
hsa-miR-324-3p
0.959
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000435271
Biotype: antisense
Gene id: ENSG00000231132
Gene Name: RP11-40C11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
133-158
0.059
5
6mer
216-237
0.003
0
AC124057.5
hsa-miR-324-3p
0.959
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000433035
Biotype: antisense
Gene id: ENSG00000230483
Gene Name: AC124057.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
332-355
0.044
2
8mer+mismatch
370-395
0.015
7
6mer
25-46
0.003
1
SRRM2-AS1
hsa-miR-324-3p
0.958
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000382313
Biotype: antisense
Gene id: ENSG00000205913
Gene Name: SRRM2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
66-83
0.028
1
7mer
2441-2460
0.007
1
7mer
2806-2818
0.006
1
6mer
3289-3301
0.004
1
7mer
589-605
0.003
0
6mer
3181-3204
0.003
0
8mer
969-987
0.003
Not Conserved
7mer
2220-2233
0.002
1
7mer
1342-1359
0.002
0
6mer
3203-3218
0.002
1
6mer
733-755
0.002
1
CTD-2236F14.1
hsa-miR-324-3p
0.957
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000511327
Biotype: antisense
Gene id: ENSG00000249713
Gene Name: CTD-2236F14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
73-89
0.058
1
6mer
1146-1166
0.004
1
GTF3C2-AS1
hsa-miR-324-3p
0.957
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000585645
Biotype: antisense
Gene id: ENSG00000234945
Gene Name: GTF3C2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
87-103
0.061
7
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