LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-324-3p


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Gene
miRNA
Score
DIANA Links
AC144568.2
hsa-miR-324-3p
0.981
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522481
Biotype: lincRNA
Gene id: ENSG00000253896
Gene Name: AC144568.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
545-560
0.075
1
RP3-323A16.1
hsa-miR-324-3p
0.981
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623959
Biotype: antisense
Gene id: ENSG00000279184
Gene Name: RP3-323A16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
39807-39831
0.010
1
8mer
36029-36048
0.010
1
8mer
47038-47063
0.006
1
8mer
41666-41686
0.005
1
7mer
25380-25402
0.004
1
8mer
39628-39652
0.003
0
7mer
5443-5468
0.003
0
8mer
13252-13267
0.003
0
7mer
41452-41473
0.003
1
6mer
561-586
0.002
1
7mer
10577-10593
0.002
1
7mer
50806-50824
0.002
1
7mer
4709-4732
0.002
Not Conserved
6mer
6445-6449
0.002
0
6mer
777-803
0.002
1
6mer
22550-22569
0.001
1
6mer
35036-35062
0.001
5
6mer
38857-38871
0.001
1
6mer
47800-47816
0.001
0
6mer
14685-14702
0.001
0
7mer
40819-40831
0.001
0
6mer
16098-16117
0.001
2
6mer
15646-15663
0.001
0
7mer
5261-5285
0.001
Not Conserved
6mer
45203-45227
0.001
2
6mer
27880-27899
0.001
0
6mer
16287-16300
0.001
1
6mer
18231-18257
0.001
Not Conserved
6mer
13324-13338
0.001
4
6mer
47961-47987
0.001
0
6mer
17149-17163
0.001
0
RP11-340F16.1
hsa-miR-324-3p
0.980
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000606239
Biotype: lincRNA
Gene id: ENSG00000272177
Gene Name: RP11-340F16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
204-223
0.074
1
XXbac-BPG258E24.10
hsa-miR-324-3p
0.979
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000623334
Biotype: antisense
Gene id: ENSG00000277661
Gene Name: XXbac-BPG258E24.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
353-369
0.074
1
RP11-107K17.1
hsa-miR-324-3p
0.977
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000578367
Biotype: lincRNA
Gene id: ENSG00000263862
Gene Name: RP11-107K17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
24-34
0.072
1
GTF3C2-AS1
hsa-miR-324-3p
0.977
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000588707
Biotype: antisense
Gene id: ENSG00000234945
Gene Name: GTF3C2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
87-103
0.069
7
6mer
257-283
0.002
0
GTF3C2-AS1
hsa-miR-324-3p
0.977
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000587586
Biotype: antisense
Gene id: ENSG00000234945
Gene Name: GTF3C2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
87-103
0.069
7
6mer
257-283
0.002
0
ERVK3-1
hsa-miR-324-3p
0.976
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000590505
Biotype: retained_intron
Gene id: ENSG00000142396
Gene Name: ERVK3-1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3649-3670
0.058
1
7mer
1408-1423
0.009
0
6mer
1094-1121
0.004
0
TEX26-AS1
hsa-miR-324-3p
0.976
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000588425
Biotype: antisense
Gene id: ENSG00000224743
Gene Name: TEX26-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1277-1293
0.071
1
CD27-AS1
hsa-miR-324-3p
0.975
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000535639
Biotype: retained_intron
Gene id: ENSG00000215039
Gene Name: CD27-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2162-2180
0.053
5
7mer
474-492
0.008
1
7mer
1891-1914
0.003
Not Conserved
6mer
1449-1473
0.003
4
7mer
1925-1949
0.002
1
7mer
2072-2086
0.002
0
XLOC_004723
hsa-miR-324-3p
0.974
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010257
Biotype: transcript isomorph
Gene id: XLOC_004723
Gene Name: XLOC_004723
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
165-190
0.070
1
XLOC_009879
hsa-miR-324-3p
0.974
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00021212
Biotype: transcript isomorph
Gene id: XLOC_009879
Gene Name: XLOC_009879
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Heart Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
893-910
0.051
2
6mer
1117-1133
0.010
1
7mer
761-779
0.007
1
6mer
192-211
0.002
1
XLOC_013675
hsa-miR-324-3p
0.974
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028014
Biotype: transcript isomorph
Gene id: XLOC_013675
Gene Name: XLOC_013675
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
291-317
0.066
4
7mer
369-387
0.003
1
CTD-3064H18.4
hsa-miR-324-3p
0.974
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000316807
Biotype: antisense
Gene id: ENSG00000180458
Gene Name: CTD-3064H18.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2847-2866
0.038
1
7mer
2809-2827
0.013
0
6mer
2203-2217
0.007
1
6mer
964-978
0.005
0
6mer
852-879
0.004
0
7mer
1374-1401
0.003
Not Conserved
LINC01460
hsa-miR-324-3p
0.972
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000379677
Biotype: lincRNA
Gene id: ENSG00000205334
Gene Name: LINC01460
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2155-2173
0.034
4
7mer
2670-2686
0.019
4
7mer
861-880
0.007
2
7mer
2194-2210
0.005
4
7mer
828-840
0.003
1
6mer
773-797
0.001
1
RP11-1085N6.4
hsa-miR-324-3p
0.972
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555316
Biotype: lincRNA
Gene id: ENSG00000258703
Gene Name: RP11-1085N6.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
484-505
0.069
0
RP11-794P6.1
hsa-miR-324-3p
0.972
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000528614
Biotype: sense_intronic
Gene id: ENSG00000255428
Gene Name: RP11-794P6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
327-338
0.031
6
8mer
1973-1998
0.029
0
6mer
2306-2322
0.009
7
CTC-273B12.10
hsa-miR-324-3p
0.972
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000598924
Biotype: lincRNA
Gene id: ENSG00000269814
Gene Name: CTC-273B12.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
179-200
0.068
5
XLOC_006059
hsa-miR-324-3p
0.970
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00012998
Biotype: transcript isomorph
Gene id: XLOC_006059
Gene Name: XLOC_006059
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
342-357
0.068
3
XLOC_001556
hsa-miR-324-3p
0.970
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004835
Biotype: transcript isomorph
Gene id: XLOC_001556
Gene Name: XLOC_001556
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
782-802
0.067
0
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