LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-324-3p


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Gene
miRNA
Score
DIANA Links
XLOC_008678
hsa-miR-324-3p
0.990
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018395
Biotype: transcript isomorph
Gene id: XLOC_008678
Gene Name: XLOC_008678
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
165-185
0.070
0
6mer
613-630
0.016
0
AC024560.2
hsa-miR-324-3p
0.990
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000424493
Biotype: lincRNA
Gene id: ENSG00000236833
Gene Name: AC024560.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
667-679
0.062
0
8mer+wobble
1234-1251
0.023
0
BACE2-IT1
hsa-miR-324-3p
0.989
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000433378
Biotype: antisense
Gene id: ENSG00000224388
Gene Name: BACE2-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
26-44
0.084
1
LINC01015
hsa-miR-324-3p
0.989
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000434657
Biotype: antisense
Gene id: ENSG00000224582
Gene Name: LINC01015
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
402-423
0.029
1
8mer
2327-2352
0.028
0
8mer
2433-2451
0.014
Not Conserved
6mer
2565-2586
0.006
1
6mer
2037-2059
0.003
0
6mer
1870-1887
0.003
1
CTD-3162L10.1
hsa-miR-324-3p
0.989
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600983
Biotype: lincRNA
Gene id: ENSG00000267053
Gene Name: CTD-3162L10.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1482-1505
0.056
1
7mer
251-276
0.022
1
6mer
706-725
0.006
1
CTD-3162L10.1
hsa-miR-324-3p
0.989
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586340
Biotype: lincRNA
Gene id: ENSG00000267053
Gene Name: CTD-3162L10.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1482-1505
0.056
1
7mer
251-276
0.022
1
6mer
706-725
0.006
1
CTD-2523D13.1
hsa-miR-324-3p
0.989
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000529229
Biotype: lincRNA
Gene id: ENSG00000255247
Gene Name: CTD-2523D13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
304-329
0.047
1
8mer
340-360
0.017
1
7mer
160-177
0.016
1
6mer
404-424
0.003
1
RP11-600L4.1
hsa-miR-324-3p
0.987
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000506010
Biotype: lincRNA
Gene id: ENSG00000251642
Gene Name: RP11-600L4.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
166-189
0.082
2
XLOC_009650
hsa-miR-324-3p
0.987
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00021051
Biotype: transcript isomorph
Gene id: XLOC_009650
Gene Name: XLOC_009650
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
237-263
0.069
1
6mer
260-282
0.013
1
XLOC_007089
hsa-miR-324-3p
0.987
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015015
Biotype: transcript isomorph
Gene id: XLOC_007089
Gene Name: XLOC_007089
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
11437-11455
0.026
Not Conserved
9mer
10749-10768
0.020
0
9mer
3416-3432
0.012
0
7mer
1499-1504
0.006
0
6mer
846-863
0.004
0
6mer
8563-8585
0.002
0
7mer
6504-6524
0.002
0
6mer
10224-10245
0.002
0
6mer
3923-3945
0.001
0
6mer
10971-10987
0.001
Not Conserved
6mer
10164-10186
0.001
0
6mer
3212-3225
0.001
Not Conserved
6mer
8903-8920
0.001
Not Conserved
6mer
5211-5235
0.000
Not Conserved
6mer
8837-8856
0.000
0
6mer
5195-5215
0.000
Not Conserved
MIR6818
hsa-miR-324-3p
0.987
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624945
Biotype: antisense
Gene id: ENSG00000279159
Gene Name: MIR6818
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
15641-15655
0.031
4
8mer
36689-36710
0.015
1
7mer
1619-1636
0.005
1
7mer
43583-43605
0.004
2
6mer
39033-39059
0.002
8
6mer
5261-5287
0.002
3
6mer
31039-31054
0.002
1
6mer
27180-27189
0.002
1
6mer
11877-11903
0.002
1
6mer
17284-17295
0.002
0
6mer
14150-14169
0.001
3
6mer
10520-10546
0.001
0
6mer
48218-48244
0.001
5
6mer
18542-18556
0.001
1
8mer+mismatch
12425-12445
0.001
0
6mer
13775-13784
0.001
1
7mer
47363-47388
0.001
1
6mer
48332-48356
0.001
0
6mer
34970-34990
0.001
1
6mer
45704-45723
0.001
1
6mer
47148-47165
0.001
1
6mer
47705-47728
0.001
3
6mer
14808-14831
0.001
0
LINC01449
hsa-miR-324-3p
0.986
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000440213
Biotype: lincRNA
Gene id: ENSG00000224017
Gene Name: LINC01449
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
199-214
0.080
3
HNRNPU-AS1
hsa-miR-324-3p
0.985
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000366527
Biotype: antisense
Gene id: ENSG00000188206
Gene Name: HNRNPU-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
244-261
0.066
1
7mer
3075-3093
0.007
1
7mer
2251-2269
0.005
1
6mer
2707-2728
0.001
1
LINC00237
hsa-miR-324-3p
0.985
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000455890
Biotype: lincRNA
Gene id: ENSG00000225127
Gene Name: LINC00237
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1031-1057
0.075
4
7mer
1109-1127
0.004
1
XLOC_000191
hsa-miR-324-3p
0.985
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000939
Biotype: transcript isomorph
Gene id: XLOC_000191
Gene Name: XLOC_000191
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1958-1981
0.079
0
LL22NC03-86G7.1
hsa-miR-324-3p
0.985
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000458178
Biotype: antisense
Gene id: ENSG00000224086
Gene Name: LL22NC03-86G7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1585-1607
0.006
2
7mer
727-751
0.005
1
8mer
20374-20391
0.005
1
7mer
19951-19976
0.004
1
7mer
21274-21288
0.004
0
8mer
2867-2883
0.004
2
7mer
16097-16118
0.004
2
8mer
3144-3157
0.004
1
7mer
22559-22576
0.003
2
7mer
14925-14944
0.002
1
7mer
19763-19787
0.002
3
6mer
30586-30610
0.002
3
8mer
15172-15187
0.002
1
6mer
105-130
0.002
2
6mer
19065-19085
0.002
1
7mer
31138-31156
0.002
1
6mer
9055-9073
0.002
0
7mer
10107-10126
0.002
0
7mer
9696-9717
0.002
0
7mer
2058-2079
0.001
1
6mer
136-150
0.001
0
7mer
1601-1623
0.001
1
7mer
26954-26975
0.001
1
6mer
2043-2061
0.001
0
7mer
8484-8510
0.001
1
6mer
16580-16599
0.001
1
6mer
18799-18823
0.001
4
6mer
21705-21723
0.001
1
6mer
15583-15597
0.001
3
6mer
20860-20878
0.001
0
6mer
5568-5590
0.001
1
7mer
20506-20524
0.001
0
6mer
21974-21997
0.001
1
6mer
10435-10450
0.001
1
6mer
24020-24033
0.001
2
6mer
19570-19589
0.001
0
6mer
10232-10246
0.001
1
6mer
15609-15636
0.000
1
6mer
20449-20471
0.000
1
7mer
18186-18203
0.000
0
7mer
2103-2128
0.000
0
6mer
18163-18178
0.000
0
6mer
20430-20450
0.000
1
6mer
22017-22040
0.000
0
6mer
16604-16630
0.000
1
CTA-373H7.7
hsa-miR-324-3p
0.983
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000382641
Biotype: lincRNA
Gene id: ENSG00000206028
Gene Name: CTA-373H7.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2290-2305
0.058
2
8mer
803-820
0.020
1
RP3-512E2.2
hsa-miR-324-3p
0.983
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000413986
Biotype: antisense
Gene id: ENSG00000226455
Gene Name: RP3-512E2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
389-414
0.069
1
6mer
233-248
0.005
5
6mer
4-29
0.003
3
GTF3C2-AS1
hsa-miR-324-3p
0.983
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000585326
Biotype: antisense
Gene id: ENSG00000234945
Gene Name: GTF3C2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
165-182
0.062
7
9mer
666-683
0.015
3
RP11-66B24.7
hsa-miR-324-3p
0.981
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000431060
Biotype: processed_transcript
Gene id: ENSG00000272808
Gene Name: RP11-66B24.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4697-4719
0.072
3
7mer
1559-1583
0.001
1
7mer
3417-3433
0.001
1
7mer
1600-1623
0.000
0
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