LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-324-3p


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Gene
miRNA
Score
DIANA Links
CTA-390C10.10
hsa-miR-324-3p
0.884
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000609475
Biotype: sense_intronic
Gene id: ENSG00000272977
Gene Name: CTA-390C10.10
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1094-1114
0.018
0
8mer
2632-2654
0.018
0
8mer
2697-2712
0.008
1
BGLT3
hsa-miR-324-3p
0.884
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000564523
Biotype: sense_overlapping
Gene id: ENSG00000260629
Gene Name: BGLT3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
946-966
0.044
1
XLOC_007004
hsa-miR-324-3p
0.883
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014933
Biotype: transcript isomorph
Gene id: XLOC_007004
Gene Name: XLOC_007004
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
749-771
0.044
1
RP11-863P13.4
hsa-miR-324-3p
0.883
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000378417
Biotype: lincRNA
Gene id: ENSG00000205037
Gene Name: RP11-863P13.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
33-53
0.020
1
8mer
1315-1335
0.011
1
7mer
109-130
0.004
Not Conserved
6mer
355-375
0.003
1
7mer
2296-2312
0.003
1
6mer
784-795
0.001
0
6mer
2798-2816
0.001
0
XLOC_004067
hsa-miR-324-3p
0.882
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008571
Biotype: transcript isomorph
Gene id: XLOC_004067
Gene Name: XLOC_004067
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
484-504
0.040
1
6mer
185-206
0.003
1
RP5-1092A3.5
hsa-miR-324-3p
0.882
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000605846
Biotype: lincRNA
Gene id: ENSG00000271398
Gene Name: RP5-1092A3.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
16-34
0.044
1
LINC00866
hsa-miR-324-3p
0.882
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000427379
Biotype: lincRNA
Gene id: ENSG00000227356
Gene Name: LINC00866
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
356-378
0.044
0
GPR1-AS
hsa-miR-324-3p
0.880
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000624973
Biotype: retained_intron
Gene id: ENSG00000279220
Gene Name: GPR1-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
287-313
0.043
0
XLOC_011747
hsa-miR-324-3p
0.880
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024430
Biotype: transcript isomorph
Gene id: XLOC_011747
Gene Name: XLOC_011747
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
992-1018
0.037
1
6mer
484-499
0.006
3
RP11-147L13.12
hsa-miR-324-3p
0.879
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000613178
Biotype: lincRNA
Gene id: ENSG00000274561
Gene Name: RP11-147L13.12
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
388-403
0.043
1
C1RL-AS1
hsa-miR-324-3p
0.879
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000541775
Biotype: antisense
Gene id: ENSG00000205885
Gene Name: C1RL-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5172-5194
0.013
3
8mer+wobble
77-101
0.012
3
7mer
691-711
0.011
1
6mer
4939-4956
0.004
3
7mer
2774-2799
0.001
1
6mer
2725-2746
0.001
1
XLOC_005815
hsa-miR-324-3p
0.879
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012778
Biotype: transcript isomorph
Gene id: XLOC_005815
Gene Name: XLOC_005815
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
122-133
0.043
0
RP11-661P17.1
hsa-miR-324-3p
0.878
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000554333
Biotype: lincRNA
Gene id: ENSG00000258551
Gene Name: RP11-661P17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1945-1971
0.043
0
TEX26-AS1
hsa-miR-324-3p
0.878
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000591300
Biotype: antisense
Gene id: ENSG00000224743
Gene Name: TEX26-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
146-169
0.029
1
7mer
419-432
0.014
1
CTD-2540F13.2
hsa-miR-324-3p
0.878
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000602255
Biotype: antisense
Gene id: ENSG00000267892
Gene Name: CTD-2540F13.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
211-228
0.036
1
6mer
82-94
0.003
2
6mer
391-413
0.003
1
6mer
917-943
0.002
Not Conserved
RP11-388M20.1
hsa-miR-324-3p
0.877
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565152
Biotype: antisense
Gene id: ENSG00000260060
Gene Name: RP11-388M20.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
185-206
0.039
0
7mer
361-382
0.003
0
MIR143HG
hsa-miR-324-3p
0.877
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000614517
Biotype: lincRNA
Gene id: ENSG00000249669
Gene Name: MIR143HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5079-5103
0.024
3
7mer
2129-2153
0.009
2
6mer
165-191
0.003
1
6mer
144-167
0.003
1
7mer
2379-2402
0.002
1
6mer
4055-4068
0.002
1
XLOC_011353
hsa-miR-324-3p
0.877
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023240
Biotype: transcript isomorph
Gene id: XLOC_011353
Gene Name: XLOC_011353
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1943-1969
0.043
0
KCNH1-IT1
hsa-miR-324-3p
0.877
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000438597
Biotype: sense_intronic
Gene id: ENSG00000234233
Gene Name: KCNH1-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
506-529
0.040
4
6mer
303-318
0.003
1
PCAT29
hsa-miR-324-3p
0.876
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558411
Biotype: lincRNA
Gene id: ENSG00000259641
Gene Name: PCAT29
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1535-1554
0.039
3
8mer+mismatch
1203-1226
0.002
1
6mer
1022-1044
0.002
2
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