LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-3159


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Gene
miRNA
Score
DIANA Links
RP11-115H13.1
hsa-miR-3159
0.838
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000620503
Biotype: sense_intronic
Gene id: ENSG00000273906
Gene Name: RP11-115H13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1264-1279
0.022
0
7mer
1865-1885
0.016
0
LOC100268168
hsa-miR-3159
0.837
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_026682.1
Biotype: antisense
Gene id: NR_026682.1 (gene)
Gene Name: LOC100268168
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
107-130
0.030
1
6mer
94-108
0.006
1
8mer+mismatch
618-636
0.002
1
RP11-594N15.2
hsa-miR-3159
0.836
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522807
Biotype: lincRNA
Gene id: ENSG00000254266
Gene Name: RP11-594N15.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
227-249
0.037
8
RP11-47L3.1
hsa-miR-3159
0.836
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000591886
Biotype: lincRNA
Gene id: ENSG00000267364
Gene Name: RP11-47L3.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
310-329
0.037
0
XLOC_008033
hsa-miR-3159
0.836
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017441
Biotype: transcript isomorph
Gene id: XLOC_008033
Gene Name: XLOC_008033
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
569-589
0.014
0
7mer
1117-1143
0.011
1
7mer
602-620
0.007
0
6mer
2951-2964
0.003
0
6mer
2068-2094
0.002
0
AC016907.3
hsa-miR-3159
0.836
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000455424
Biotype: antisense
Gene id: ENSG00000233862
Gene Name: AC016907.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3520-3542
0.020
2
8mer
269-289
0.013
0
8mer
2134-2147
0.004
0
MIR6818
hsa-miR-3159
0.835
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624945
Biotype: antisense
Gene id: ENSG00000279159
Gene Name: MIR6818
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
45769-45792
0.007
0
7mer
23069-23087
0.006
2
6mer
19881-19907
0.003
8
6mer
5764-5776
0.002
2
6mer
8646-8665
0.002
1
7mer
43351-43377
0.002
1
6mer
42039-42062
0.002
1
6mer
15592-15606
0.002
1
6mer
34056-34073
0.002
2
6mer
22079-22096
0.002
1
6mer
22636-22651
0.002
1
6mer
29916-29924
0.002
1
6mer
41068-41084
0.001
2
6mer
3401-3422
0.001
0
8mer+mismatch
4958-4976
0.001
1
8mer+mismatch
11767-11785
0.001
1
8mer+mismatch
32549-32567
0.001
0
LINC01420
hsa-miR-3159
0.835
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000374922
Biotype: antisense
Gene id: ENSG00000204272
Gene Name: LINC01420
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
71-93
0.023
1
7mer
971-997
0.008
1
6mer
1453-1479
0.004
0
6mer
990-1004
0.002
0
RP11-508N22.12
hsa-miR-3159
0.834
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000608335
Biotype: lincRNA
Gene id: ENSG00000272983
Gene Name: RP11-508N22.12
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4064-4082
0.026
1
6mer
748-760
0.005
1
6mer
3130-3152
0.003
1
6mer
1866-1884
0.003
0
XLOC_009783
hsa-miR-3159
0.834
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020451
Biotype: transcript isomorph
Gene id: XLOC_009783
Gene Name: XLOC_009783
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
156-180
0.034
0
6mer
1479-1499
0.003
Not Conserved
CLDN10-AS1
hsa-miR-3159
0.833
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000416909
Biotype: antisense
Gene id: ENSG00000223392
Gene Name: CLDN10-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3-17
0.030
1
6mer
250-266
0.007
1
LINC00261
hsa-miR-3159
0.833
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000564492
Biotype: lincRNA
Gene id: ENSG00000259974
Gene Name: LINC00261
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
64-91
0.024
0
7mer
1065-1085
0.009
2
6mer
3628-3650
0.003
1
6mer
2468-2483
0.002
4
XLOC_011040
hsa-miR-3159
0.833
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022758
Biotype: transcript isomorph
Gene id: XLOC_011040
Gene Name: XLOC_011040
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Skeletal Muscle Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
68-88
0.037
6
RP11-218M22.1
hsa-miR-3159
0.833
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000537514
Biotype: antisense
Gene id: ENSG00000177406
Gene Name: RP11-218M22.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
838-857
0.025
0
7mer
1330-1357
0.008
3
6mer
1610-1635
0.004
4
CRNDE
hsa-miR-3159
0.832
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000558952
Biotype: lincRNA
Gene id: ENSG00000245694
Gene Name: CRNDE
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
262-281
0.037
4
XLOC_004827
hsa-miR-3159
0.832
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010338
Biotype: transcript isomorph
Gene id: XLOC_004827
Gene Name: XLOC_004827
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
112-132
0.037
1
XLOC_010399
hsa-miR-3159
0.832
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021796
Biotype: transcript isomorph
Gene id: XLOC_010399
Gene Name: XLOC_010399
UCSC graphic: -
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
113-139
0.015
1
7mer
1093-1098
0.015
1
6mer
241-253
0.007
3
RP11-47L3.1
hsa-miR-3159
0.829
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000585387
Biotype: lincRNA
Gene id: ENSG00000267364
Gene Name: RP11-47L3.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
146-165
0.037
0
CTC-241F20.4
hsa-miR-3159
0.829
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600941
Biotype: lincRNA
Gene id: ENSG00000268186
Gene Name: CTC-241F20.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
267-293
0.030
1
6mer
199-217
0.007
1
RP11-455J20.3
hsa-miR-3159
0.828
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000608680
Biotype: antisense
Gene id: ENSG00000273240
Gene Name: RP11-455J20.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
211-237
0.036
3
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