LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-3159


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Gene
miRNA
Score
DIANA Links
AC005754.7
hsa-miR-3159
0.856
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000624802
Biotype: antisense
Gene id: ENSG00000272154
Gene Name: AC005754.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
233-259
0.040
3
XLOC_000233
hsa-miR-3159
0.855
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000218
Biotype: transcript isomorph
Gene id: XLOC_000233
Gene Name: XLOC_000233
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
495-512
0.040
1
LINC01233
hsa-miR-3159
0.855
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000601708
Biotype: lincRNA
Gene id: ENSG00000269364
Gene Name: LINC01233
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
398-418
0.040
0
RP11-565F19.2
hsa-miR-3159
0.850
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000607496
Biotype: sense_intronic
Gene id: ENSG00000271851
Gene Name: RP11-565F19.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
280-298
0.039
6
RP11-335E6.3
hsa-miR-3159
0.850
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000449140
Biotype: lincRNA
Gene id: ENSG00000228734
Gene Name: RP11-335E6.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
600-617
0.039
1
LINC00547
hsa-miR-3159
0.848
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000612438
Biotype: lincRNA
Gene id: ENSG00000275226
Gene Name: LINC00547
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3013-3029
0.039
1
RP11-192H23.8
hsa-miR-3159
0.847
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000582858
Biotype: sense_intronic
Gene id: ENSG00000264608
Gene Name: RP11-192H23.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
134-148
0.029
2
8mer
268-293
0.010
Not Conserved
AP003774.6
hsa-miR-3159
0.847
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000457725
Biotype: lincRNA
Gene id: ENSG00000231680
Gene Name: AP003774.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
291-313
0.026
1
8mer+mismatch
130-148
0.012
1
LINC00662
hsa-miR-3159
0.847
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: NR_027301.1
Biotype: lincRNA
Gene id: NR_027301.1 (gene)
Gene Name: LINC00662
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
1710-1734
0.024
0
6mer
1932-1955
0.015
0
LINC00662
hsa-miR-3159
0.846
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000590523
Biotype: lincRNA
Gene id: ENSG00000261824
Gene Name: LINC00662
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
1712-1736
0.024
0
6mer
1934-1957
0.014
0
LINC01233
hsa-miR-3159
0.845
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594200
Biotype: lincRNA
Gene id: ENSG00000269364
Gene Name: LINC01233
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
284-304
0.038
0
AC098617.1
hsa-miR-3159
0.845
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000598327
Biotype: antisense
Gene id: ENSG00000233766
Gene Name: AC098617.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
87-108
0.038
7
RP11-736K20.5
hsa-miR-3159
0.845
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000528660
Biotype: antisense
Gene id: ENSG00000255471
Gene Name: RP11-736K20.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
139-156
0.038
2
RP11-111M22.5
hsa-miR-3159
0.844
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000607673
Biotype: lincRNA
Gene id: ENSG00000271757
Gene Name: RP11-111M22.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
676-691
0.038
5
AC099344.3
hsa-miR-3159
0.844
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000454489
Biotype: lincRNA
Gene id: ENSG00000231403
Gene Name: AC099344.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3-28
0.036
1
6mer
78-96
0.003
0
LINC01233
hsa-miR-3159
0.843
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000598832
Biotype: lincRNA
Gene id: ENSG00000269364
Gene Name: LINC01233
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
390-410
0.038
0
CDKN2B-AS1
hsa-miR-3159
0.843
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000428597
Biotype: antisense
Gene id: ENSG00000240498
Gene Name: CDKN2B-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3621-3645
0.033
1
7mer
1782-1794
0.004
0
6mer
1150-1163
0.001
1
RP3-412A9.17
hsa-miR-3159
0.841
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623789
Biotype: sense_overlapping
Gene id: ENSG00000278920
Gene Name: RP3-412A9.17
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5532-5558
0.012
1
9mer
5916-5936
0.007
0
9mer
1761-1781
0.005
1
8mer+mismatch
16539-16557
0.002
1
6mer
4718-4723
0.002
1
8mer+mismatch
208-226
0.002
0
8mer+mismatch
16405-16423
0.002
0
6mer
9017-9034
0.002
2
8mer+mismatch
387-408
0.002
0
8mer+mismatch
875-893
0.001
0
8mer+mismatch
9780-9798
0.001
0
XLOC_004065
hsa-miR-3159
0.839
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008570
Biotype: transcript isomorph
Gene id: XLOC_004065
Gene Name: XLOC_004065
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Heart Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
111-131
0.038
0
RP11-242F11.2
hsa-miR-3159
0.838
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000422023
Biotype: lincRNA
Gene id: ENSG00000234675
Gene Name: RP11-242F11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
201-216
0.038
2
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