LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-3159


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Gene
miRNA
Score
DIANA Links
RP11-386B13.3
hsa-miR-3159
0.874
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000511746
Biotype: lincRNA
Gene id: ENSG00000250754
Gene Name: RP11-386B13.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
820-846
0.040
9
6mer
597-623
0.002
1
RP11-545I5.3
hsa-miR-3159
0.874
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000592775
Biotype: antisense
Gene id: ENSG00000235652
Gene Name: RP11-545I5.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
484-497
0.037
0
6mer
188-205
0.006
1
MIR4534
hsa-miR-3159
0.874
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623111
Biotype: sense_overlapping
Gene id: ENSG00000279010
Gene Name: MIR4534
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
131-154
0.011
1
7mer
41098-41111
0.006
1
6mer
20593-20605
0.004
9
9mer
2419-2439
0.002
0
6mer
36140-36156
0.002
6
6mer
10184-10194
0.002
1
6mer
43780-43805
0.002
3
6mer
1667-1691
0.002
1
6mer
27334-27352
0.001
1
6mer
31206-31224
0.001
1
8mer+mismatch
42660-42678
0.001
1
6mer
36612-36633
0.001
0
6mer
51184-51199
0.001
1
6mer
40764-40791
0.001
1
8mer+mismatch
13604-13627
0.001
0
8mer+mismatch
21981-21999
0.001
1
8mer+mismatch
45368-45386
0.001
0
8mer+mismatch
21672-21690
0.001
1
8mer+mismatch
40164-40182
0.001
0
8mer+mismatch
39702-39720
0.001
0
6mer
22036-22058
0.000
Not Conserved
8mer+mismatch
39843-39861
0.000
0
8mer+mismatch
21807-21825
0.000
0
RP11-365H22.2
hsa-miR-3159
0.873
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000610270
Biotype: lincRNA
Gene id: ENSG00000272576
Gene Name: RP11-365H22.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HREpiC Kidney Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
544-567
0.036
1
6mer
204-231
0.006
2
LINC00603
hsa-miR-3159
0.871
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000507027
Biotype: lincRNA
Gene id: ENSG00000250048
Gene Name: LINC00603
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
425-442
0.029
1
7mer
81-100
0.013
0
MIR222HG
hsa-miR-3159
0.871
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000602461
Biotype: lincRNA
Gene id: ENSG00000270069
Gene Name: MIR222HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
296-305
0.042
1
XLOC_010784
hsa-miR-3159
0.867
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022456
Biotype: transcript isomorph
Gene id: XLOC_010784
Gene Name: XLOC_010784
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
338-353
0.041
1
XLOC_012004
hsa-miR-3159
0.866
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00025047
Biotype: transcript isomorph
Gene id: XLOC_012004
Gene Name: XLOC_012004
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
52-68
0.023
9
7mer
881-903
0.009
8
7mer
552-569
0.009
8
XLOC_005303
hsa-miR-3159
0.864
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011820
Biotype: transcript isomorph
Gene id: XLOC_005303
Gene Name: XLOC_005303
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
396-412
0.041
6
XLOC_006483
hsa-miR-3159
0.864
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013850
Biotype: transcript isomorph
Gene id: XLOC_006483
Gene Name: XLOC_006483
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
91-111
0.041
1
XLOC_003172
hsa-miR-3159
0.863
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006549
Biotype: transcript isomorph
Gene id: XLOC_003172
Gene Name: XLOC_003172
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
80-106
0.041
Not Conserved
XLOC_007801
hsa-miR-3159
0.863
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016844
Biotype: transcript isomorph
Gene id: XLOC_007801
Gene Name: XLOC_007801
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1824-1836
0.041
1
RP11-122L9.1
hsa-miR-3159
0.863
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000618284
Biotype: lincRNA
Gene id: ENSG00000277930
Gene Name: RP11-122L9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
156-169
0.023
4
7mer
495-518
0.013
1
6mer
53-71
0.005
Not Conserved
LINC00971
hsa-miR-3159
0.861
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000484892
Biotype: lincRNA
Gene id: ENSG00000242641
Gene Name: LINC00971
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
261-285
0.028
0
7mer
6442-6456
0.007
1
8mer
5883-5906
0.005
1
6mer
5874-5899
0.001
1
RP11-104J23.1
hsa-miR-3159
0.861
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000617328
Biotype: antisense
Gene id: ENSG00000275944
Gene Name: RP11-104J23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1166-1181
0.041
0
MGC45800
hsa-miR-3159
0.860
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000315302
Biotype: antisense
Gene id: ENSG00000177822
Gene Name: MGC45800
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2075-2096
0.027
8
7mer
241-260
0.008
1
6mer
164-185
0.005
1
XLOC_009248
hsa-miR-3159
0.860
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019969
Biotype: transcript isomorph
Gene id: XLOC_009248
Gene Name: XLOC_009248
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1358-1378
0.029
1
7mer
916-939
0.011
1
CTC-498M16.2
hsa-miR-3159
0.860
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000506041
Biotype: lincRNA
Gene id: ENSG00000250156
Gene Name: CTC-498M16.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
489-508
0.028
2
7mer
999-1020
0.009
1
6mer
576-601
0.004
1
XLOC_006954
hsa-miR-3159
0.860
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014884
Biotype: transcript isomorph
Gene id: XLOC_006954
Gene Name: XLOC_006954
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
518-536
0.040
0
RP11-259O18.4
hsa-miR-3159
0.859
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000545706
Biotype: antisense
Gene id: ENSG00000257105
Gene Name: RP11-259O18.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
142-152
0.040
1
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