LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-3159


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Gene
miRNA
Score
DIANA Links
RP11-731J8.2
hsa-miR-3159
0.898
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000562284
Biotype: sense_overlapping
Gene id: ENSG00000260918
Gene Name: RP11-731J8.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6510-6529
0.024
6
7mer
3663-3682
0.005
1
8mer
4980-4990
0.005
1
6mer
748-769
0.004
1
6mer
5382-5406
0.002
1
6mer
3407-3420
0.002
3
6mer
1568-1584
0.002
0
8mer+mismatch
4325-4343
0.001
1
RP11-10N23.2
hsa-miR-3159
0.898
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520562
Biotype: antisense
Gene id: ENSG00000253854
Gene Name: RP11-10N23.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
907-926
0.023
1
7mer
754-764
0.023
3
CTD-3193K9.3
hsa-miR-3159
0.895
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000592440
Biotype: antisense
Gene id: ENSG00000267765
Gene Name: CTD-3193K9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
29-46
0.035
2
7mer
336-350
0.011
1
XLOC_004192
hsa-miR-3159
0.895
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008673
Biotype: transcript isomorph
Gene id: XLOC_004192
Gene Name: XLOC_004192
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
218-238
0.034
0
7mer
2049-2074
0.012
1
RP11-379J13.2
hsa-miR-3159
0.895
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000527281
Biotype: lincRNA
Gene id: ENSG00000255502
Gene Name: RP11-379J13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
131-153
0.032
1
7mer
307-321
0.010
0
7mer
344-359
0.004
Not Conserved
CTB-89H12.4
hsa-miR-3159
0.895
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000499521
Biotype: retained_intron
Gene id: ENSG00000230551
Gene Name: CTB-89H12.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
302-322
0.024
8
7mer
7589-7611
0.013
4
7mer
4294-4315
0.002
0
7mer
4265-4286
0.002
1
6mer
6668-6682
0.002
1
6mer
4318-4341
0.001
1
C3orf67-AS1
hsa-miR-3159
0.892
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000482372
Biotype: antisense
Gene id: ENSG00000242428
Gene Name: C3orf67-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
74-92
0.021
7
8mer
1664-1684
0.021
0
6mer
254-277
0.003
2
RP11-11N9.4
hsa-miR-3159
0.889
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520819
Biotype: lincRNA
Gene id: ENSG00000247134
Gene Name: RP11-11N9.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
365-384
0.039
1
6mer
590-615
0.005
1
RP11-531A24.5
hsa-miR-3159
0.888
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000517664
Biotype: antisense
Gene id: ENSG00000253636
Gene Name: RP11-531A24.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1643-1670
0.037
0
6mer
732-755
0.004
2
6mer
2875-2889
0.003
Not Conserved
XLOC_006057
hsa-miR-3159
0.887
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013422
Biotype: transcript isomorph
Gene id: XLOC_006057
Gene Name: XLOC_006057
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
254-271
0.044
1
LINC01206
hsa-miR-3159
0.887
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000482787
Biotype: lincRNA
Gene id: ENSG00000242512
Gene Name: LINC01206
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
8941-8966
0.035
0
7mer
7086-7106
0.005
3
7mer
4164-4187
0.005
1
RP11-218M22.1
hsa-miR-3159
0.886
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000318291
Biotype: antisense
Gene id: ENSG00000177406
Gene Name: RP11-218M22.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1157-1176
0.022
0
7mer
1649-1676
0.012
3
6mer
1929-1954
0.005
4
7mer
535-552
0.005
1
RP11-363G2.4
hsa-miR-3159
0.885
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000445646
Biotype: lincRNA
Gene id: ENSG00000229556
Gene Name: RP11-363G2.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
395-411
0.044
0
RP11-11N9.4
hsa-miR-3159
0.883
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000500843
Biotype: lincRNA
Gene id: ENSG00000247134
Gene Name: RP11-11N9.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
337-356
0.039
1
6mer
562-587
0.005
1
RP11-884K10.6
hsa-miR-3159
0.879
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000607740
Biotype: antisense
Gene id: ENSG00000271916
Gene Name: RP11-884K10.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
56-67
0.043
0
XLOC_009929
hsa-miR-3159
0.879
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020613
Biotype: transcript isomorph
Gene id: XLOC_009929
Gene Name: XLOC_009929
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Liver Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
75-100
0.043
1
CTD-2619J13.19
hsa-miR-3159
0.879
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000595059
Biotype: lincRNA
Gene id: ENSG00000269473
Gene Name: CTD-2619J13.19
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4812-4833
0.038
1
6mer
4420-4432
0.002
1
6mer
2675-2691
0.002
0
6mer
3996-4016
0.001
1
RP11-554D20.1
hsa-miR-3159
0.878
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560864
Biotype: antisense
Gene id: ENSG00000259591
Gene Name: RP11-554D20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
634-655
0.028
8
7mer
544-565
0.015
1
RP11-239A17.1
hsa-miR-3159
0.877
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000539266
Biotype: lincRNA
Gene id: ENSG00000255740
Gene Name: RP11-239A17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
226-251
0.029
2
6mer
139-161
0.014
11
LINC01492
hsa-miR-3159
0.877
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000411575
Biotype: lincRNA
Gene id: ENSG00000225564
Gene Name: LINC01492
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
808-827
0.025
0
8mer
1751-1772
0.018
0
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