LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-3159


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Gene
miRNA
Score
DIANA Links
XLOC_010279
hsa-miR-3159
0.914
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020261
Biotype: transcript isomorph
Gene id: XLOC_010279
Gene Name: XLOC_010279
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2337-2351
0.036
0
8mer+mismatch
1531-1549
0.007
0
8mer+mismatch
1225-1243
0.007
0
LINC01002
hsa-miR-3159
0.912
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000619150
Biotype: lincRNA
Gene id: ENSG00000206082
Gene Name: LINC01002
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
235-252
0.049
1
FAM225B
hsa-miR-3159
0.912
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000439875
Biotype: lincRNA
Gene id: ENSG00000225684
Gene Name: FAM225B
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
31-48
0.048
0
8mer+mismatch
1080-1098
0.001
0
XLOC_012593
hsa-miR-3159
0.910
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025154
Biotype: transcript isomorph
Gene id: XLOC_012593
Gene Name: XLOC_012593
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
8-21
0.030
0
6mer
147-163
0.019
1
RP11-73O6.3
hsa-miR-3159
0.910
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000622734
Biotype: antisense
Gene id: ENSG00000227678
Gene Name: RP11-73O6.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
841-858
0.033
8
8mer
94-118
0.015
0
RP5-857K21.2
hsa-miR-3159
0.909
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000423796
Biotype: lincRNA
Gene id: ENSG00000235146
Gene Name: RP5-857K21.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
576-597
0.046
0
6mer
535-554
0.002
Not Conserved
RP11-378J18.9
hsa-miR-3159
0.908
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000619187
Biotype: lincRNA
Gene id: ENSG00000276997
Gene Name: RP11-378J18.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
235-252
0.048
1
NAMA
hsa-miR-3159
0.908
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000605707
Biotype: lincRNA
Gene id: ENSG00000271086
Gene Name: NAMA
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1445-1470
0.039
Not Conserved
6mer
579-599
0.005
4
6mer
1283-1301
0.003
4
6mer
1356-1383
0.002
0
RP11-757G1.6
hsa-miR-3159
0.908
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000512200
Biotype: lincRNA
Gene id: ENSG00000250508
Gene Name: RP11-757G1.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3221-3246
0.025
0
6mer
3189-3212
0.016
0
6mer
1160-1176
0.007
0
RP5-896L10.1
hsa-miR-3159
0.906
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000425113
Biotype: antisense
Gene id: ENSG00000232825
Gene Name: RP5-896L10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2369-2382
0.025
3
7mer
2213-2237
0.021
2
6mer
1603-1621
0.003
1
LOC100190986
hsa-miR-3159
0.905
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: NR_024456.1
Biotype: sense
Gene id: NR_024456.1 (gene)
Gene Name: LOC100190986
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
938-954
0.031
0
6mer
2214-2227
0.017
0
XLOC_001220
hsa-miR-3159
0.904
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001834
Biotype: transcript isomorph
Gene id: XLOC_001220
Gene Name: XLOC_001220
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
526-543
0.041
0
9mer
867-887
0.007
1
XLOC_003449
hsa-miR-3159
0.903
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007979
Biotype: transcript isomorph
Gene id: XLOC_003449
Gene Name: XLOC_003449
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
218-236
0.024
1
8mer
1548-1564
0.023
2
AC074286.1
hsa-miR-3159
0.902
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000397057
Biotype: sense_overlapping
Gene id: ENSG00000213963
Gene Name: AC074286.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
67-88
0.020
2
8mer
4997-5019
0.019
2
6mer
4523-4540
0.003
1
6mer
1635-1652
0.002
4
6mer
2651-2670
0.002
1
6mer
3565-3576
0.001
2
XLOC_011726
hsa-miR-3159
0.901
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024417
Biotype: transcript isomorph
Gene id: XLOC_011726
Gene Name: XLOC_011726
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1941-1956
0.046
1
8mer+mismatch
1520-1538
0.001
0
RP11-775C24.3
hsa-miR-3159
0.901
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000563737
Biotype: lincRNA
Gene id: ENSG00000260619
Gene Name: RP11-775C24.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
134-146
0.032
2
7mer
572-587
0.014
1
AC138035.2
hsa-miR-3159
0.901
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000499986
Biotype: lincRNA
Gene id: ENSG00000238035
Gene Name: AC138035.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
224-241
0.047
1
XLOC_013708
hsa-miR-3159
0.900
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028355
Biotype: transcript isomorph
Gene id: XLOC_013708
Gene Name: XLOC_013708
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1532-1550
0.037
0
6mer
783-796
0.010
0
LOC100506730
hsa-miR-3159
0.899
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_037847.1
Biotype: lincRNA
Gene id: NR_037847.1 (gene)
Gene Name: LOC100506730
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2353-2373
0.039
1
6mer
2169-2194
0.008
1
AC074286.1
hsa-miR-3159
0.898
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000456746
Biotype: sense_overlapping
Gene id: ENSG00000213963
Gene Name: AC074286.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
63-84
0.021
2
8mer
4784-4806
0.016
2
6mer
4505-4522
0.004
1
6mer
1631-1648
0.002
4
6mer
2647-2666
0.002
1
6mer
3561-3572
0.001
2
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