LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-3159


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Gene
miRNA
Score
DIANA Links
RP11-538I12.2
hsa-miR-3159
0.932
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569032
Biotype: antisense
Gene id: ENSG00000261063
Gene Name: RP11-538I12.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
364-382
0.053
1
RP11-576I22.2
hsa-miR-3159
0.929
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000416416
Biotype: antisense
Gene id: ENSG00000231407
Gene Name: RP11-576I22.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
88-107
0.053
7
AC008079.10
hsa-miR-3159
0.928
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623543
Biotype: antisense
Gene id: ENSG00000280007
Gene Name: AC008079.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
20319-20339
0.026
11
7mer
1693-1712
0.006
1
9mer
13086-13106
0.004
Not Conserved
7mer
2187-2202
0.004
1
6mer
14434-14452
0.002
1
6mer
11535-11556
0.002
3
6mer
13652-13664
0.002
1
6mer
9892-9911
0.001
1
6mer
17770-17775
0.001
0
6mer
7089-7101
0.001
1
8mer+mismatch
18060-18078
0.001
1
6mer
6463-6484
0.001
1
6mer
9858-9884
0.001
0
8mer+mismatch
16906-16924
0.001
1
AC008278.3
hsa-miR-3159
0.927
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000431117
Biotype: antisense
Gene id: ENSG00000224194
Gene Name: AC008278.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
128-146
0.052
7
XLOC_001417
hsa-miR-3159
0.926
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004743
Biotype: transcript isomorph
Gene id: XLOC_001417
Gene Name: XLOC_001417
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3004-3016
0.046
5
7mer
1512-1536
0.006
1
LINC01002
hsa-miR-3159
0.925
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000619388
Biotype: lincRNA
Gene id: ENSG00000206082
Gene Name: LINC01002
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
239-256
0.052
1
XLOC_002716
hsa-miR-3159
0.925
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00005549
Biotype: transcript isomorph
Gene id: XLOC_002716
Gene Name: XLOC_002716
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1077-1096
0.049
0
6mer
589-611
0.003
1
LL22NC03-22D1.1
hsa-miR-3159
0.922
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624601
Biotype: lincRNA
Gene id: ENSG00000279003
Gene Name: LL22NC03-22D1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
28663-28681
0.010
1
8mer
7344-7357
0.007
1
7mer
2281-2305
0.006
1
9mer
20223-20243
0.005
1
7mer
11982-12007
0.005
0
7mer
16643-16670
0.004
1
7mer
2813-2831
0.002
Not Conserved
6mer
25594-25612
0.002
1
6mer
20027-20051
0.002
0
6mer
24349-24374
0.002
2
6mer
17918-17932
0.002
3
6mer
26377-26393
0.002
1
7mer
2903-2922
0.002
0
6mer
6668-6695
0.001
2
RP13-20L14.1
hsa-miR-3159
0.921
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000566971
Biotype: lincRNA
Gene id: ENSG00000260011
Gene Name: RP13-20L14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
11-24
0.031
0
6mer
150-166
0.019
1
RP11-356I2.4
hsa-miR-3159
0.921
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000431144
Biotype: antisense
Gene id: ENSG00000237499
Gene Name: RP11-356I2.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Breast Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
523-547
0.037
2
7mer
261-282
0.013
2
AC012531.25
hsa-miR-3159
0.920
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000562848
Biotype: lincRNA
Gene id: ENSG00000260597
Gene Name: AC012531.25
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2410-2431
0.031
7
6mer
2445-2464
0.009
7
7mer
1383-1404
0.007
4
6mer
2462-2480
0.004
2
RP11-244B22.6
hsa-miR-3159
0.919
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564059
Biotype: lincRNA
Gene id: ENSG00000261398
Gene Name: RP11-244B22.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1510-1529
0.050
0
CTB-61M7.2
hsa-miR-3159
0.918
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594721
Biotype: lincRNA
Gene id: ENSG00000268734
Gene Name: CTB-61M7.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
248-273
0.045
1
6mer
197-212
0.005
1
RP11-34P13.13
hsa-miR-3159
0.918
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000490997
Biotype: antisense
Gene id: ENSG00000241860
Gene Name: RP11-34P13.13
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
239-256
0.050
1
RP11-47P18.2
hsa-miR-3159
0.917
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000473938
Biotype: lincRNA
Gene id: ENSG00000242781
Gene Name: RP11-47P18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
581-600
0.050
0
XIST
hsa-miR-3159
0.917
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000429829
Biotype: lincRNA
Gene id: ENSG00000229807
Gene Name: XIST
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
15904-15917
0.009
1
7mer
1961-1977
0.009
1
7mer
8435-8451
0.007
3
7mer
14918-14939
0.006
1
7mer
12763-12776
0.005
1
6mer
1334-1346
0.004
3
6mer
876-896
0.002
1
6mer
10768-10783
0.002
2
6mer
10293-10314
0.002
1
6mer
12953-12966
0.001
1
6mer
15738-15758
0.001
0
8mer+mismatch
14012-14030
0.001
1
RP11-92C4.6
hsa-miR-3159
0.917
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000605631
Biotype: antisense
Gene id: ENSG00000270412
Gene Name: RP11-92C4.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
25-38
0.046
1
6mer
254-269
0.004
1
RP4-568F9.6
hsa-miR-3159
0.916
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000457009
Biotype: lincRNA
Gene id: ENSG00000230010
Gene Name: RP4-568F9.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1678-1699
0.038
1
6mer
2067-2080
0.005
1
6mer
966-975
0.004
1
6mer
865-882
0.003
1
CTA-342B11.3
hsa-miR-3159
0.915
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624235
Biotype: lincRNA
Gene id: ENSG00000280370
Gene Name: CTA-342B11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
13754-13776
0.016
0
8mer
6406-6426
0.006
1
7mer
12200-12215
0.006
1
7mer
15349-15367
0.006
0
6mer
24603-24616
0.005
0
6mer
7815-7825
0.002
2
6mer
2212-2229
0.001
1
6mer
22054-22078
0.001
Not Conserved
8mer+mismatch
1292-1310
0.001
1
6mer
2419-2428
0.001
0
6mer
13102-13115
0.001
0
8mer+mismatch
23551-23569
0.001
0
8mer+mismatch
10225-10243
0.001
0
8mer+mismatch
16786-16804
0.001
0
8mer+mismatch
7897-7915
0.000
0
AP000705.7
hsa-miR-3159
0.914
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000444130
Biotype: lincRNA
Gene id: ENSG00000226043
Gene Name: AP000705.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
351-371
0.041
3
6mer
331-349
0.008
2
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