LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-3159


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Gene
miRNA
Score
DIANA Links
XLOC_006753
hsa-miR-3159
0.952
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015261
Biotype: transcript isomorph
Gene id: XLOC_006753
Gene Name: XLOC_006753
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5937-5961
0.032
2
7mer
24-41
0.014
1
7mer
737-757
0.010
3
6mer
1031-1056
0.002
1
6mer
4330-4351
0.001
1
RP11-335L23.5
hsa-miR-3159
0.951
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000610012
Biotype: lincRNA
Gene id: ENSG00000272784
Gene Name: RP11-335L23.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
243-257
0.059
4
RP11-228B15.4
hsa-miR-3159
0.950
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000439298
Biotype: antisense
Gene id: ENSG00000225032
Gene Name: RP11-228B15.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2013-2028
0.059
1
OVCH1-AS1
hsa-miR-3159
0.950
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: NR_073171.1
Biotype: antisense
Gene id: NR_073171.1 (gene)
Gene Name: OVCH1-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1066-1082
0.054
0
6mer
594-612
0.005
2
XLOC_011715
hsa-miR-3159
0.950
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024390
Biotype: transcript isomorph
Gene id: XLOC_011715
Gene Name: XLOC_011715
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
971-988
0.058
8
6mer
2156-2179
0.001
1
XLOC_002442
hsa-miR-3159
0.947
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004539
Biotype: transcript isomorph
Gene id: XLOC_002442
Gene Name: XLOC_002442
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
242-257
0.058
1
RP11-378J18.9
hsa-miR-3159
0.947
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000620399
Biotype: lincRNA
Gene id: ENSG00000276997
Gene Name: RP11-378J18.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
133-150
0.058
1
PCAT19
hsa-miR-3159
0.945
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588495
Biotype: lincRNA
Gene id: ENSG00000267107
Gene Name: PCAT19
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
616-641
0.023
0
6mer
196-213
0.019
1
7mer
1544-1556
0.008
0
8mer+mismatch
1057-1075
0.008
1
XLOC_004270
hsa-miR-3159
0.944
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009857
Biotype: transcript isomorph
Gene id: XLOC_004270
Gene Name: XLOC_004270
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Heart Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3846-3870
0.049
1
7mer
1545-1568
0.003
0
6mer
3249-3270
0.003
1
6mer
2667-2679
0.002
1
XXyac-YX155B6.5
hsa-miR-3159
0.942
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000618809
Biotype: lincRNA
Gene id: ENSG00000232265
Gene Name: XXyac-YX155B6.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
223-248
0.029
Not Conserved
7mer
561-566
0.027
2
RP11-114G22.1
hsa-miR-3159
0.942
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000540994
Biotype: lincRNA
Gene id: ENSG00000256995
Gene Name: RP11-114G22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
57-82
0.056
1
ANKRD44-IT1
hsa-miR-3159
0.941
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000428191
Biotype: sense_intronic
Gene id: ENSG00000236977
Gene Name: ANKRD44-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
512-525
0.056
3
LINC00664
hsa-miR-3159
0.941
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596203
Biotype: lincRNA
Gene id: ENSG00000268658
Gene Name: LINC00664
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+mismatch
1343-1360
0.016
1
6mer
281-299
0.016
1
8mer+mismatch
1040-1057
0.012
1
8mer+mismatch
1174-1192
0.012
1
CTD-2555I5.1
hsa-miR-3159
0.940
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000532605
Biotype: lincRNA
Gene id: ENSG00000254434
Gene Name: CTD-2555I5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
93-107
0.056
3
CTD-2020K17.1
hsa-miR-3159
0.938
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000585471
Biotype: antisense
Gene id: ENSG00000267121
Gene Name: CTD-2020K17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
274-294
0.024
1
7mer
879-901
0.016
4
9mer
140-165
0.013
1
8mer+mismatch
579-597
0.002
1
CTA-992D9.9
hsa-miR-3159
0.937
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624792
Biotype: lincRNA
Gene id: ENSG00000279848
Gene Name: CTA-992D9.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
775-801
0.039
2
7mer
858-871
0.009
1
6mer
152-173
0.005
1
6mer
879-898
0.002
Not Conserved
XLOC_013100
hsa-miR-3159
0.935
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027059
Biotype: transcript isomorph
Gene id: XLOC_013100
Gene Name: XLOC_013100
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4462-4487
0.051
1
6mer
3134-3149
0.002
0
6mer
2004-2016
0.001
0
LINC01002
hsa-miR-3159
0.934
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000614200
Biotype: lincRNA
Gene id: ENSG00000206082
Gene Name: LINC01002
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
150-167
0.054
1
CTA-796E4.5
hsa-miR-3159
0.934
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624243
Biotype: lincRNA
Gene id: ENSG00000280065
Gene Name: CTA-796E4.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
13339-13363
0.009
1
7mer
1256-1273
0.007
1
7mer
30526-30548
0.004
1
7mer
6442-6457
0.004
1
6mer
25-47
0.004
0
7mer
9916-9934
0.003
0
6mer
17392-17406
0.003
3
6mer
2703-2717
0.003
1
6mer
6628-6642
0.002
4
6mer
7794-7818
0.002
2
6mer
22401-22418
0.002
1
6mer
15879-15894
0.002
1
6mer
16755-16776
0.002
1
6mer
20942-20952
0.002
0
6mer
27151-27177
0.001
0
6mer
23702-23729
0.001
1
6mer
10814-10832
0.001
1
6mer
24114-24136
0.001
0
8mer+mismatch
9293-9311
0.001
1
6mer
5200-5218
0.001
0
XLOC_005405
hsa-miR-3159
0.932
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011906
Biotype: transcript isomorph
Gene id: XLOC_005405
Gene Name: XLOC_005405
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
170-189
0.036
0
7mer
201-222
0.018
1
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