LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-3159


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Gene
miRNA
Score
DIANA Links
LOC101926935
hsa-miR-3159
0.980
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_110001.1
Biotype: sense
Gene id: NR_110001.1 (gene)
Gene Name: LOC101926935
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2310-2332
0.064
0
8mer+mismatch
3450-3468
0.006
0
6mer
766-782
0.002
Not Conserved
6mer
1027-1053
0.001
Not Conserved
6mer
1841-1858
0.001
Not Conserved
6mer
1706-1732
0.001
Not Conserved
CTA-254O6.1
hsa-miR-3159
0.978
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000561473
Biotype: lincRNA
Gene id: ENSG00000261462
Gene Name: CTA-254O6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1704-1723
0.061
1
7mer
1308-1332
0.008
2
6mer
259-276
0.004
1
RP11-6N13.4
hsa-miR-3159
0.977
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000523745
Biotype: lincRNA
Gene id: ENSG00000253776
Gene Name: RP11-6N13.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
346-371
0.058
1
6mer
120-140
0.014
1
RP11-691G17.1
hsa-miR-3159
0.976
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000567488
Biotype: lincRNA
Gene id: ENSG00000261826
Gene Name: RP11-691G17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1869-1881
0.033
1
6mer
2552-2566
0.014
1
6mer
2092-2115
0.013
1
6mer
105-125
0.007
0
6mer
1244-1252
0.004
0
RP3-323A16.1
hsa-miR-3159
0.974
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623959
Biotype: antisense
Gene id: ENSG00000279184
Gene Name: RP3-323A16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
51466-51486
0.007
0
7mer
40559-40576
0.006
1
7mer
25976-25992
0.006
1
7mer
28853-28875
0.006
0
8mer
27851-27873
0.005
0
7mer
19392-19413
0.005
1
7mer
38429-38444
0.004
2
9mer
10827-10847
0.004
1
7mer
52656-52680
0.004
0
9mer
32406-32426
0.003
0
7mer
7042-7059
0.002
0
6mer
37044-37065
0.002
1
6mer
8337-8341
0.002
0
6mer
6619-6638
0.002
0
6mer
28311-28338
0.001
0
6mer
37977-37997
0.001
1
6mer
8431-8455
0.001
Not Conserved
6mer
12835-12859
0.001
0
6mer
9311-9326
0.001
1
6mer
45579-45591
0.001
0
6mer
45224-45242
0.001
1
6mer
40375-40388
0.001
Not Conserved
6mer
11489-11510
0.001
1
8mer+mismatch
36591-36609
0.001
0
8mer+mismatch
2996-3014
0.001
0
8mer+mismatch
18211-18229
0.001
0
XLOC_013047
hsa-miR-3159
0.973
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026830
Biotype: transcript isomorph
Gene id: XLOC_013047
Gene Name: XLOC_013047
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2830-2846
0.062
0
7mer
1741-1758
0.008
1
RP11-316M21.7
hsa-miR-3159
0.973
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000443919
Biotype: antisense
Gene id: ENSG00000236308
Gene Name: RP11-316M21.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
502-516
0.070
5
RP11-732A21.2
hsa-miR-3159
0.967
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000566440
Biotype: lincRNA
Gene id: ENSG00000260008
Gene Name: RP11-732A21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1244-1267
0.057
6
7mer
1361-1378
0.009
1
RP11-539L10.3
hsa-miR-3159
0.966
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000513179
Biotype: lincRNA
Gene id: ENSG00000251580
Gene Name: RP11-539L10.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
127-142
0.053
1
6mer
219-245
0.012
1
RP11-539L10.3
hsa-miR-3159
0.966
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000515205
Biotype: lincRNA
Gene id: ENSG00000251580
Gene Name: RP11-539L10.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
130-145
0.053
1
6mer
222-248
0.012
1
XLOC_009043
hsa-miR-3159
0.964
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019211
Biotype: transcript isomorph
Gene id: XLOC_009043
Gene Name: XLOC_009043
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
641-660
0.064
0
XLOC_002335
hsa-miR-3159
0.964
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003408
Biotype: transcript isomorph
Gene id: XLOC_002335
Gene Name: XLOC_002335
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
249-275
0.050
1
7mer
355-372
0.015
2
XLOC_002727
hsa-miR-3159
0.962
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006125
Biotype: transcript isomorph
Gene id: XLOC_002727
Gene Name: XLOC_002727
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3590-3606
0.035
0
7mer
3237-3253
0.019
3
6mer
3466-3482
0.005
1
6mer
2268-2281
0.003
6
6mer
2367-2380
0.001
0
XLOC_003638
hsa-miR-3159
0.961
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008189
Biotype: transcript isomorph
Gene id: XLOC_003638
Gene Name: XLOC_003638
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
45-59
0.063
0
XLOC_001924
hsa-miR-3159
0.959
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00005049
Biotype: transcript isomorph
Gene id: XLOC_001924
Gene Name: XLOC_001924
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
42-68
0.045
1
6mer
467-488
0.017
1
XLOC_013499
hsa-miR-3159
0.958
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028139
Biotype: transcript isomorph
Gene id: XLOC_013499
Gene Name: XLOC_013499
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
198-220
0.046
0
6mer
250-267
0.016
0
CTD-2227C6.2
hsa-miR-3159
0.958
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000514840
Biotype: lincRNA
Gene id: ENSG00000249664
Gene Name: CTD-2227C6.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
794-815
0.054
1
6mer
647-666
0.008
3
XLOC_004128
hsa-miR-3159
0.958
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007884
Biotype: transcript isomorph
Gene id: XLOC_004128
Gene Name: XLOC_004128
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
94-113
0.062
0
RP11-1263C18.1
hsa-miR-3159
0.956
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000610212
Biotype: lincRNA
Gene id: ENSG00000273238
Gene Name: RP11-1263C18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
122-137
0.061
2
RP11-1437A8.4
hsa-miR-3159
0.954
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000563960
Biotype: lincRNA
Gene id: ENSG00000260827
Gene Name: RP11-1437A8.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
28-40
0.060
0
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