LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-3159


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Gene
miRNA
Score
DIANA Links
CTA-929C8.9
hsa-miR-3159
0.828
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624278
Biotype: sense_intronic
Gene id: ENSG00000279185
Gene Name: CTA-929C8.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
24549-24564
0.009
2
7mer
24106-24127
0.008
2
7mer
15397-15407
0.007
1
6mer
762-784
0.003
1
6mer
16673-16697
0.003
1
6mer
7397-7407
0.002
0
6mer
21493-21512
0.002
1
6mer
4701-4717
0.001
1
8mer+mismatch
1754-1772
0.001
1
8mer+mismatch
13480-13498
0.001
0
CTC-308K20.1
hsa-miR-3159
0.827
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000520067
Biotype: antisense
Gene id: ENSG00000204758
Gene Name: CTC-308K20.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
103-126
0.031
1
6mer
90-104
0.005
1
RP11-57A19.5
hsa-miR-3159
0.827
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000602838
Biotype: lincRNA
Gene id: ENSG00000270118
Gene Name: RP11-57A19.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
144-164
0.020
0
8mer+mismatch
106-129
0.016
0
XLOC_011785
hsa-miR-3159
0.826
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024886
Biotype: transcript isomorph
Gene id: XLOC_011785
Gene Name: XLOC_011785
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
666-682
0.019
2
7mer
724-746
0.013
4
6mer
276-292
0.004
1
CTD-3037G24.3
hsa-miR-3159
0.825
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564505
Biotype: antisense
Gene id: ENSG00000259899
Gene Name: CTD-3037G24.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4-21
0.016
0
6mer
529-547
0.010
2
6mer
46-67
0.009
1
AC010880.1
hsa-miR-3159
0.823
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000425176
Biotype: lincRNA
Gene id: ENSG00000224400
Gene Name: AC010880.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
285-311
0.036
0
RP11-1109M24.5
hsa-miR-3159
0.823
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577956
Biotype: lincRNA
Gene id: ENSG00000264956
Gene Name: RP11-1109M24.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
582-598
0.021
0
6mer
2429-2438
0.009
0
8mer+mismatch
2530-2548
0.006
0
XLOC_003870
hsa-miR-3159
0.823
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00009022
Biotype: transcript isomorph
Gene id: XLOC_003870
Gene Name: XLOC_003870
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
172-187
0.029
1
6mer
264-290
0.007
1
WEE2-AS1
hsa-miR-3159
0.823
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000473776
Biotype: retained_intron
Gene id: ENSG00000228775
Gene Name: WEE2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
75-92
0.027
2
7mer
228-245
0.008
1
LOC100268168
hsa-miR-3159
0.823
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_026683.1
Biotype: antisense
Gene id: NR_026683.1 (gene)
Gene Name: LOC100268168
UCSC graphic: -
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
107-130
0.031
1
6mer
94-108
0.005
1
RP11-378J18.8
hsa-miR-3159
0.823
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608771
Biotype: antisense
Gene id: ENSG00000272750
Gene Name: RP11-378J18.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
328-344
0.036
1
MIR181A2HG
hsa-miR-3159
0.823
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000429139
Biotype: antisense
Gene id: ENSG00000224020
Gene Name: MIR181A2HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
103-119
0.036
8
RP11-806O11.1
hsa-miR-3159
0.822
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520646
Biotype: lincRNA
Gene id: ENSG00000253671
Gene Name: RP11-806O11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
555-571
0.036
1
FLJ32255
hsa-miR-3159
0.822
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_104643.1
Biotype: lincRNA
Gene id: NR_104643.1 (gene)
Gene Name: FLJ32255
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
310-337
0.013
1
6mer
565-588
0.013
1
8mer
2614-2641
0.006
Not Conserved
8mer+mismatch
2482-2500
0.004
0
LOC643441
hsa-miR-3159
0.822
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_038846.1
Biotype: lincRNA
Gene id: NR_038846.1 (gene)
Gene Name: LOC643441
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
55-68
0.021
5
7mer
991-1008
0.009
3
6mer
844-861
0.003
1
6mer
159-181
0.002
0
RP11-372E1.4
hsa-miR-3159
0.821
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000479792
Biotype: antisense
Gene id: ENSG00000243818
Gene Name: RP11-372E1.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Liver Normal/Primary


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
718-733
0.018
1
7mer
649-669
0.017
1
RP11-190J23.1
hsa-miR-3159
0.821
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000549878
Biotype: antisense
Gene id: ENSG00000257284
Gene Name: RP11-190J23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
127-148
0.036
10
RP11-41O4.2
hsa-miR-3159
0.820
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000582251
Biotype: lincRNA
Gene id: ENSG00000266278
Gene Name: RP11-41O4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2219-2243
0.032
1
6mer
2508-2529
0.003
1
FOXP1-IT1
hsa-miR-3159
0.819
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000498714
Biotype: sense_intronic
Gene id: ENSG00000242094
Gene Name: FOXP1-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
76-92
0.033
0
6mer
2297-2309
0.002
4
ST7-OT3
hsa-miR-3159
0.817
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_002332.1
Biotype: sense
Gene id: NR_002332.1 (gene)
Gene Name: ST7-OT3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-3159
Sequence: uaggauuacaagugucggccac
MirBase ID: MIMAT0015033
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
887-902
0.028
5
6mer
423-439
0.007
6
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