LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-29c-3p


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Gene
miRNA
Score
DIANA Links
RP11-111E14.1
hsa-miR-29c-3p
0.880
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558050
Biotype: antisense
Gene id: ENSG00000259351
Gene Name: RP11-111E14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
934-955
0.030
0
7mer
149-174
0.014
Not Conserved
XLOC_003640
hsa-miR-29c-3p
0.880
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008192
Biotype: transcript isomorph
Gene id: XLOC_003640
Gene Name: XLOC_003640
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
48-63
0.043
1
LOC100190986
hsa-miR-29c-3p
0.879
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: NR_024456.1
Biotype: sense
Gene id: NR_024456.1 (gene)
Gene Name: LOC100190986
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1432-1444
0.029
0
6mer
2323-2338
0.014
0
RP1-309I22.2
hsa-miR-29c-3p
0.879
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624184
Biotype: sense_overlapping
Gene id: ENSG00000279338
Gene Name: RP1-309I22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5205-5229
0.008
0
7mer
28396-28416
0.007
0
8mer
14859-14883
0.005
0
7mer
8453-8463
0.004
1
6mer
28859-28868
0.004
0
7mer
4739-4759
0.003
0
7mer
13618-13638
0.002
0
6mer
22309-22333
0.001
1
6mer
17566-17584
0.001
4
6mer
20781-20807
0.001
1
6mer
21449-21472
0.001
2
6mer
19543-19560
0.001
1
6mer
1775-1795
0.001
1
6mer
24526-24540
0.001
2
XLOC_000361
hsa-miR-29c-3p
0.878
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001115
Biotype: transcript isomorph
Gene id: XLOC_000361
Gene Name: XLOC_000361
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
61-81
0.043
1
CTA-363E19.2
hsa-miR-29c-3p
0.876
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000607036
Biotype: antisense
Gene id: ENSG00000272072
Gene Name: CTA-363E19.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
72-92
0.043
0
XLOC_012451
hsa-miR-29c-3p
0.876
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025223
Biotype: transcript isomorph
Gene id: XLOC_012451
Gene Name: XLOC_012451
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
612-635
0.023
3
7mer
312-324
0.020
3
RP5-1186N24.3
hsa-miR-29c-3p
0.874
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000499525
Biotype: antisense
Gene id: ENSG00000246350
Gene Name: RP5-1186N24.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
Fibroblasts Lung Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1988-2004
0.038
0
7mer
184-206
0.004
0
MIR4534
hsa-miR-29c-3p
0.873
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623111
Biotype: sense_overlapping
Gene id: ENSG00000279010
Gene Name: MIR4534
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
14982-15001
0.007
1
8mer
52192-52210
0.005
1
7mer
15846-15864
0.003
1
8mer
20123-20142
0.003
1
7mer
51145-51164
0.002
0
6mer
53751-53766
0.002
1
6mer
8995-9019
0.002
3
6mer
29514-29526
0.002
7
8mer
50839-50852
0.002
0
6mer
53216-53237
0.001
Not Conserved
6mer
30393-30418
0.001
0
6mer
31038-31057
0.001
1
7mer
24785-24806
0.001
2
6mer
8791-8795
0.001
1
6mer
50804-50821
0.001
1
6mer
46406-46422
0.001
0
6mer
26829-26843
0.001
2
6mer
48734-48754
0.001
1
6mer
34983-35001
0.001
2
6mer
29098-29116
0.001
0
6mer
6898-6916
0.001
0
7mer
20140-20155
0.000
1
RP11-664I21.5
hsa-miR-29c-3p
0.871
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000524453
Biotype: antisense
Gene id: ENSG00000254568
Gene Name: RP11-664I21.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
584-595
0.023
0
8mer
480-504
0.015
2
6mer
471-487
0.004
1
RP11-945C19.4
hsa-miR-29c-3p
0.870
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000582939
Biotype: antisense
Gene id: ENSG00000264449
Gene Name: RP11-945C19.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
448-463
0.031
2
7mer
297-309
0.010
3
RP11-273B19.2
hsa-miR-29c-3p
0.867
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000512898
Biotype: lincRNA
Gene id: ENSG00000249727
Gene Name: RP11-273B19.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
114-131
0.041
0
LINC01095
hsa-miR-29c-3p
0.867
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000513023
Biotype: lincRNA
Gene id: ENSG00000248809
Gene Name: LINC01095
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
25-43
0.041
0
LINC00969
hsa-miR-29c-3p
0.866
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000595086
Biotype: lincRNA
Gene id: ENSG00000242086
Gene Name: LINC00969
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
125-152
0.023
2
8mer
125-140
0.015
1
6mer
399-420
0.004
3
RP11-634B7.4
hsa-miR-29c-3p
0.866
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000582218
Biotype: antisense
Gene id: ENSG00000235749
Gene Name: RP11-634B7.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
54-72
0.036
0
6mer
324-336
0.005
0
LINC00969
hsa-miR-29c-3p
0.865
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000615212
Biotype: lincRNA
Gene id: ENSG00000242086
Gene Name: LINC00969
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
292-319
0.024
2
8mer
292-307
0.017
1
RP11-930O11.1
hsa-miR-29c-3p
0.865
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000558120
Biotype: lincRNA
Gene id: ENSG00000259719
Gene Name: RP11-930O11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
144-158
0.024
5
7mer
237-256
0.008
1
6mer
217-239
0.005
2
6mer
506-525
0.004
0
XLOC_004802
hsa-miR-29c-3p
0.864
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010319
Biotype: transcript isomorph
Gene id: XLOC_004802
Gene Name: XLOC_004802
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
213-227
0.041
1
CASC7
hsa-miR-29c-3p
0.861
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000560295
Biotype: lincRNA
Gene id: ENSG00000259758
Gene Name: CASC7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2141-2164
0.016
10
7mer
4020-4047
0.010
6
7mer
5013-5031
0.005
3
7mer
1595-1610
0.004
3
6mer
6013-6032
0.004
8
6mer
4639-4662
0.001
3
LINC00969
hsa-miR-29c-3p
0.861
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000594446
Biotype: lincRNA
Gene id: ENSG00000242086
Gene Name: LINC00969
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
125-152
0.020
2
8mer
125-140
0.016
1
6mer
608-629
0.005
3
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