LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-29c-3p


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Gene
miRNA
Score
DIANA Links
RP11-649G15.2
hsa-miR-29c-3p
0.897
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518591
Biotype: antisense
Gene id: ENSG00000253582
Gene Name: RP11-649G15.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
311-334
0.046
0
XLOC_008141
hsa-miR-29c-3p
0.896
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017307
Biotype: transcript isomorph
Gene id: XLOC_008141
Gene Name: XLOC_008141
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
108-129
0.046
0
RP11-108P20.4
hsa-miR-29c-3p
0.896
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000589476
Biotype: lincRNA
Gene id: ENSG00000267593
Gene Name: RP11-108P20.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
296-321
0.046
1
LINC00969
hsa-miR-29c-3p
0.894
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000455807
Biotype: lincRNA
Gene id: ENSG00000242086
Gene Name: LINC00969
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
277-304
0.020
2
8mer
577-600
0.013
Not Conserved
8mer
277-292
0.013
1
INTS6-AS1
hsa-miR-29c-3p
0.894
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000596303
Biotype: antisense
Gene id: ENSG00000236778
Gene Name: INTS6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
541-555
0.046
1
CTA-989H11.1
hsa-miR-29c-3p
0.892
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000609564
Biotype: lincRNA
Gene id: ENSG00000273366
Gene Name: CTA-989H11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
520-540
0.042
1
6mer
432-451
0.004
1
FAM157C
hsa-miR-29c-3p
0.892
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000566898
Biotype: lincRNA
Gene id: ENSG00000260528
Gene Name: FAM157C
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
286-308
0.045
1
RP11-314D7.2
hsa-miR-29c-3p
0.892
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550723
Biotype: lincRNA
Gene id: ENSG00000258123
Gene Name: RP11-314D7.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1131-1151
0.045
0
AC012451.1
hsa-miR-29c-3p
0.892
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000412312
Biotype: lincRNA
Gene id: ENSG00000237532
Gene Name: AC012451.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
55-72
0.045
1
XLOC_008081
hsa-miR-29c-3p
0.891
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017254
Biotype: transcript isomorph
Gene id: XLOC_008081
Gene Name: XLOC_008081
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
255-269
0.045
1
RP11-323J4.1
hsa-miR-29c-3p
0.889
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000356499
Biotype: antisense
Gene id: ENSG00000214559
Gene Name: RP11-323J4.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
276-295
0.045
0
LINC00969
hsa-miR-29c-3p
0.889
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000451216
Biotype: lincRNA
Gene id: ENSG00000242086
Gene Name: LINC00969
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
261-288
0.029
2
8mer
261-276
0.016
1
RP11-33B1.3
hsa-miR-29c-3p
0.888
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000506942
Biotype: lincRNA
Gene id: ENSG00000250950
Gene Name: RP11-33B1.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
215-235
0.045
0
XLOC_007830
hsa-miR-29c-3p
0.886
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016465
Biotype: transcript isomorph
Gene id: XLOC_007830
Gene Name: XLOC_007830
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Brain Normal/Primary
HeLa Cervix Cancer/Malignant
- Kidney Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
852-877
0.041
1
6mer
556-574
0.003
0
RP11-504P24.9
hsa-miR-29c-3p
0.886
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000618397
Biotype: lincRNA
Gene id: ENSG00000278467
Gene Name: RP11-504P24.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
215-235
0.044
0
XLOC_006058
hsa-miR-29c-3p
0.885
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013423
Biotype: transcript isomorph
Gene id: XLOC_006058
Gene Name: XLOC_006058
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
578-593
0.044
1
AC005772.2
hsa-miR-29c-3p
0.885
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000446671
Biotype: lincRNA
Gene id: ENSG00000232058
Gene Name: AC005772.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
220-245
0.044
1
RP11-145M9.4
hsa-miR-29c-3p
0.885
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000595265
Biotype: lincRNA
Gene id: ENSG00000269728
Gene Name: RP11-145M9.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
389-415
0.040
8
6mer
1363-1378
0.004
6
RP11-488I20.3
hsa-miR-29c-3p
0.883
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000561756
Biotype: lincRNA
Gene id: ENSG00000259841
Gene Name: RP11-488I20.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
403-425
0.038
0
6mer
434-460
0.005
0
LINC01015
hsa-miR-29c-3p
0.881
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000434657
Biotype: antisense
Gene id: ENSG00000224582
Gene Name: LINC01015
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
202-219
0.043
1
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