LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-29c-3p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
MIR6818
hsa-miR-29c-3p
0.905
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624945
Biotype: antisense
Gene id: ENSG00000279159
Gene Name: MIR6818
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
25958-25976
0.009
2
7mer
27253-27270
0.007
1
7mer
43737-43750
0.006
11
7mer
41546-41570
0.004
2
6mer
7624-7638
0.002
4
6mer
40639-40653
0.002
6
6mer
42446-42463
0.002
3
6mer
5598-5612
0.002
2
6mer
1479-1492
0.002
1
6mer
47639-47658
0.002
4
6mer
3655-3673
0.001
2
6mer
14145-14168
0.001
1
6mer
40276-40298
0.001
Not Conserved
6mer
18473-18493
0.001
1
6mer
37167-37190
0.001
1
6mer
11032-11049
0.001
Not Conserved
6mer
45096-45113
0.001
0
6mer
43285-43303
0.001
1
6mer
38121-38134
0.001
1
6mer
42971-42981
0.001
2
6mer
37089-37110
0.001
2
RP4-734G22.3
hsa-miR-29c-3p
0.904
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000606802
Biotype: antisense
Gene id: ENSG00000272078
Gene Name: RP4-734G22.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
368-377
0.013
11
7mer
387-403
0.013
11
7mer
519-546
0.012
13
6mer
2678-2691
0.005
14
6mer
7199-7218
0.002
3
6mer
5360-5372
0.001
0
6mer
4583-4600
0.001
1
6mer
6817-6842
0.001
1
XXbac-BPG154L12.4
hsa-miR-29c-3p
0.904
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000425033
Biotype: antisense
Gene id: ENSG00000225914
Gene Name: XXbac-BPG154L12.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3277-3296
0.040
0
7mer
1327-1349
0.007
0
RP11-215H22.1
hsa-miR-29c-3p
0.904
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000561816
Biotype: lincRNA
Gene id: ENSG00000261340
Gene Name: RP11-215H22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
861-874
0.047
1
XLOC_006442
hsa-miR-29c-3p
0.903
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013801
Biotype: transcript isomorph
Gene id: XLOC_006442
Gene Name: XLOC_006442
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
263-287
0.047
0
RP11-24M17.4
hsa-miR-29c-3p
0.903
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000569596
Biotype: lincRNA
Gene id: ENSG00000260288
Gene Name: RP11-24M17.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
158-174
0.047
0
CTA-732E4.1
hsa-miR-29c-3p
0.903
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624817
Biotype: antisense
Gene id: ENSG00000280258
Gene Name: CTA-732E4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
45-61
0.047
1
XLOC_012598
hsa-miR-29c-3p
0.902
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026224
Biotype: transcript isomorph
Gene id: XLOC_012598
Gene Name: XLOC_012598
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1730-1745
0.047
0
XLOC_009958
hsa-miR-29c-3p
0.902
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020658
Biotype: transcript isomorph
Gene id: XLOC_009958
Gene Name: XLOC_009958
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1206-1222
0.038
2
7mer
668-681
0.009
0
XLOC_011723
hsa-miR-29c-3p
0.902
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024409
Biotype: transcript isomorph
Gene id: XLOC_011723
Gene Name: XLOC_011723
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
450-467
0.047
2
LINC00969
hsa-miR-29c-3p
0.902
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000600288
Biotype: lincRNA
Gene id: ENSG00000242086
Gene Name: LINC00969
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
292-319
0.019
2
8mer
292-307
0.014
1
8mer
592-615
0.014
Not Conserved
RP11-180K7.1
hsa-miR-29c-3p
0.902
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000519700
Biotype: retained_intron
Gene id: ENSG00000242770
Gene Name: RP11-180K7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
517-535
0.030
1
8mer
46-71
0.016
0
XLOC_012695
hsa-miR-29c-3p
0.901
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026345
Biotype: transcript isomorph
Gene id: XLOC_012695
Gene Name: XLOC_012695
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
53-78
0.047
1
AC107081.5
hsa-miR-29c-3p
0.900
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000425779
Biotype: antisense
Gene id: ENSG00000236498
Gene Name: AC107081.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
225-245
0.047
1
RP11-374M1.4
hsa-miR-29c-3p
0.900
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000421848
Biotype: lincRNA
Gene id: ENSG00000223379
Gene Name: RP11-374M1.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Lung Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
250-272
0.047
4
LINC01002
hsa-miR-29c-3p
0.899
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000622411
Biotype: lincRNA
Gene id: ENSG00000206082
Gene Name: LINC01002
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
254-276
0.046
1
RP11-1000B6.7
hsa-miR-29c-3p
0.898
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000616244
Biotype: sense_intronic
Gene id: ENSG00000276724
Gene Name: RP11-1000B6.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
204-226
0.046
0
RP11-378J18.9
hsa-miR-29c-3p
0.897
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000619187
Biotype: lincRNA
Gene id: ENSG00000276997
Gene Name: RP11-378J18.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
113-128
0.046
1
RP11-1055B8.2
hsa-miR-29c-3p
0.897
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000574472
Biotype: lincRNA
Gene id: ENSG00000263154
Gene Name: RP11-1055B8.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
160-175
0.046
Not Conserved
XLOC_013541
hsa-miR-29c-3p
0.897
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028182
Biotype: transcript isomorph
Gene id: XLOC_013541
Gene Name: XLOC_013541
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1322-1343
0.046
1
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept