LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-29c-3p


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Gene
miRNA
Score
DIANA Links
XLOC_004366
hsa-miR-29c-3p
0.941
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009941
Biotype: transcript isomorph
Gene id: XLOC_004366
Gene Name: XLOC_004366
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
7689-7716
0.042
1
8mer
2117-2132
0.004
1
6mer
9492-9514
0.003
1
7mer
3449-3469
0.003
1
6mer
1965-1987
0.002
1
7mer
1999-2023
0.002
0
6mer
3998-4013
0.001
0
6mer
1659-1685
0.001
Not Conserved
TUG1
hsa-miR-29c-3p
0.941
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000540687
Biotype: antisense
Gene id: ENSG00000253352
Gene Name: TUG1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
35-55
0.032
6
7mer
422-440
0.023
9
RP11-314B1.2
hsa-miR-29c-3p
0.937
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000609089
Biotype: lincRNA
Gene id: ENSG00000273301
Gene Name: RP11-314B1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
500-511
0.055
9
XLOC_006118
hsa-miR-29c-3p
0.936
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013467
Biotype: transcript isomorph
Gene id: XLOC_006118
Gene Name: XLOC_006118
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2380-2404
0.054
1
LINC01002
hsa-miR-29c-3p
0.936
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000619150
Biotype: lincRNA
Gene id: ENSG00000206082
Gene Name: LINC01002
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
113-135
0.054
1
RP11-556E13.1
hsa-miR-29c-3p
0.934
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000443523
Biotype: antisense
Gene id: ENSG00000228651
Gene Name: RP11-556E13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
239-258
0.054
3
AL133245.2
hsa-miR-29c-3p
0.933
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000608925
Biotype: lincRNA
Gene id: ENSG00000272754
Gene Name: AL133245.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
263-280
0.029
1
7mer
250-267
0.024
1
THUMPD3-AS1
hsa-miR-29c-3p
0.932
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000520447
Biotype: antisense
Gene id: ENSG00000206573
Gene Name: THUMPD3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1436-1457
0.054
0
LINC00674
hsa-miR-29c-3p
0.930
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000620266
Biotype: lincRNA
Gene id: ENSG00000278730
Gene Name: LINC00674
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2873-2898
0.047
0
7mer
2538-2552
0.006
0
THUMPD3-AS1
hsa-miR-29c-3p
0.929
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_027007.2
Biotype: lincRNA
Gene id: NR_027007.2 (gene)
Gene Name: THUMPD3-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1466-1487
0.053
0
MLLT4-AS1
hsa-miR-29c-3p
0.929
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000359760
Biotype: lincRNA
Gene id: ENSG00000198221
Gene Name: MLLT4-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2186-2200
0.007
1
7mer
2018-2032
0.007
1
8mer
1796-1816
0.006
0
7mer
2122-2136
0.004
0
7mer
1821-1835
0.004
1
7mer
1993-2016
0.003
Not Conserved
7mer
1632-1657
0.002
0
6mer
2057-2079
0.002
0
6mer
2077-2092
0.002
1
7mer
1443-1465
0.002
0
7mer
1488-1503
0.002
0
6mer
1919-1938
0.002
1
6mer
1877-1894
0.002
0
6mer
1954-1968
0.002
1
6mer
1857-1879
0.001
1
6mer
1757-1778
0.001
0
6mer
1668-1683
0.001
0
6mer
1607-1627
0.001
0
6mer
1712-1733
0.001
Not Conserved
7mer
1463-1478
0.001
0
THUMPD3-AS1
hsa-miR-29c-3p
0.928
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000522525
Biotype: antisense
Gene id: ENSG00000206573
Gene Name: THUMPD3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1470-1491
0.053
0
LINC00969
hsa-miR-29c-3p
0.925
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000599566
Biotype: lincRNA
Gene id: ENSG00000242086
Gene Name: LINC00969
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
125-152
0.024
2
8mer
125-140
0.016
1
8mer
425-448
0.012
Not Conserved
RP11-230B22.1
hsa-miR-29c-3p
0.922
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000453229
Biotype: antisense
Gene id: ENSG00000235545
Gene Name: RP11-230B22.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1002-1017
0.051
1
LOC101928767
hsa-miR-29c-3p
0.921
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: NR_110155.1
Biotype: lincRNA
Gene id: NR_110155.1 (gene)
Gene Name: LOC101928767
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
172-188
0.051
0
RP5-905G11.3
hsa-miR-29c-3p
0.920
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000425405
Biotype: lincRNA
Gene id: ENSG00000233625
Gene Name: RP5-905G11.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
93-115
0.051
1
RP11-473O4.5
hsa-miR-29c-3p
0.918
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000524100
Biotype: antisense
Gene id: ENSG00000254317
Gene Name: RP11-473O4.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
308-327
0.046
Not Conserved
6mer
630-651
0.004
0
MLLT4-AS1
hsa-miR-29c-3p
0.917
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_027906.1
Biotype: lincRNA
Gene id: NR_027906.1 (gene)
Gene Name: MLLT4-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2004-2018
0.006
1
7mer
2172-2186
0.005
1
8mer
1782-1802
0.005
0
7mer
2243-2263
0.004
0
7mer
2108-2122
0.004
0
7mer
1807-1821
0.004
1
7mer
1979-2002
0.003
Not Conserved
6mer
2063-2078
0.002
1
7mer
1618-1643
0.002
0
6mer
2043-2065
0.002
0
7mer
1474-1489
0.002
0
6mer
1905-1924
0.001
1
6mer
1863-1880
0.001
0
7mer
1429-1451
0.001
0
6mer
1940-1954
0.001
1
6mer
1843-1865
0.001
1
6mer
1743-1764
0.001
0
6mer
1654-1669
0.001
0
7mer
1449-1464
0.001
0
6mer
1698-1719
0.001
Not Conserved
6mer
1593-1613
0.001
0
XLOC_001676
hsa-miR-29c-3p
0.917
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004889
Biotype: transcript isomorph
Gene id: XLOC_001676
Gene Name: XLOC_001676
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
553-573
0.045
0
7mer
664-682
0.005
Not Conserved
XLOC_006677
hsa-miR-29c-3p
0.917
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00014460
Biotype: transcript isomorph
Gene id: XLOC_006677
Gene Name: XLOC_006677
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1813-1831
0.005
2
6mer
1862-1882
0.005
1
6mer
1494-1514
0.003
2
6mer
1307-1327
0.003
2
6mer
1412-1432
0.002
1
6mer
1626-1646
0.002
0
6mer
1384-1404
0.002
2
6mer
1004-1024
0.002
2
6mer
1356-1370
0.002
1
6mer
1467-1481
0.002
1
6mer
1258-1272
0.002
2
6mer
1736-1750
0.002
Not Conserved
6mer
1653-1673
0.002
0
6mer
1571-1591
0.002
0
6mer
1202-1222
0.002
2
6mer
1118-1132
0.002
2
6mer
1060-1080
0.002
2
6mer
1548-1563
0.002
Not Conserved
6mer
1096-1110
0.002
2
6mer
1032-1052
0.002
2
6mer
1167-1186
0.001
1
6mer
1439-1459
0.001
0
6mer
976-996
0.001
1
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