LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-29c-3p


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Gene
miRNA
Score
DIANA Links
XLOC_000917
hsa-miR-29c-3p
0.860
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001584
Biotype: transcript isomorph
Gene id: XLOC_000917
Gene Name: XLOC_000917
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
25-36
0.012
2
7mer
533-548
0.008
0
6mer
434-450
0.007
6
6mer
289-314
0.005
4
6mer
55-79
0.005
2
6mer
1651-1668
0.002
0
6mer
1089-1113
0.002
1
LINC00969
hsa-miR-29c-3p
0.860
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000432194
Biotype: lincRNA
Gene id: ENSG00000242086
Gene Name: LINC00969
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
176-203
0.023
2
8mer
176-191
0.018
1
LINC01206
hsa-miR-29c-3p
0.859
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000482787
Biotype: lincRNA
Gene id: ENSG00000242512
Gene Name: LINC01206
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
9355-9380
0.031
1
8mer
4374-4398
0.005
1
7mer
1628-1641
0.004
1
LINC01095
hsa-miR-29c-3p
0.857
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505848
Biotype: lincRNA
Gene id: ENSG00000248809
Gene Name: LINC01095
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
296-314
0.040
0
KB-1125A3.12
hsa-miR-29c-3p
0.856
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624923
Biotype: antisense
Gene id: ENSG00000279467
Gene Name: KB-1125A3.12
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7357-7380
0.016
0
8mer
7052-7068
0.012
0
8mer
4838-4857
0.005
0
7mer
7216-7239
0.004
0
7mer
3182-3199
0.002
0
6mer
5276-5290
0.001
0
6mer
1133-1148
0.001
0
RP11-525K10.1
hsa-miR-29c-3p
0.855
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000567851
Biotype: lincRNA
Gene id: ENSG00000260706
Gene Name: RP11-525K10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
497-513
0.035
0
6mer
28-50
0.005
2
XLOC_008658
hsa-miR-29c-3p
0.855
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018379
Biotype: transcript isomorph
Gene id: XLOC_008658
Gene Name: XLOC_008658
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
192-217
0.024
2
7mer
330-343
0.016
1
LINC00969
hsa-miR-29c-3p
0.854
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000438608
Biotype: lincRNA
Gene id: ENSG00000242086
Gene Name: LINC00969
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
324-351
0.024
2
8mer
324-339
0.016
1
XLOC_005175
hsa-miR-29c-3p
0.854
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011696
Biotype: transcript isomorph
Gene id: XLOC_005175
Gene Name: XLOC_005175
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
- Kidney Normal/Primary
A549 Lung Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
42-59
0.040
1
XLOC_000647
hsa-miR-29c-3p
0.853
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00002272
Biotype: transcript isomorph
Gene id: XLOC_000647
Gene Name: XLOC_000647
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1207-1226
0.024
0
8mer
518-537
0.007
0
6mer
474-493
0.004
2
6mer
1024-1041
0.004
2
CTA-929C8.6
hsa-miR-29c-3p
0.853
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000426467
Biotype: lincRNA
Gene id: ENSG00000226741
Gene Name: CTA-929C8.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4282-4293
0.016
1
8mer
4518-4537
0.012
0
7mer
2952-2967
0.007
5
7mer
517-536
0.004
0
6mer
3023-3035
0.001
4
RP11-242P2.2
hsa-miR-29c-3p
0.852
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000553812
Biotype: antisense
Gene id: ENSG00000259106
Gene Name: RP11-242P2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
265-278
0.039
1
RP4-676J13.2
hsa-miR-29c-3p
0.850
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000420766
Biotype: lincRNA
Gene id: ENSG00000228679
Gene Name: RP4-676J13.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
123-144
0.039
1
MIR4458HG
hsa-miR-29c-3p
0.849
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000502001
Biotype: lincRNA
Gene id: ENSG00000247516
Gene Name: MIR4458HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
855-868
0.039
Not Conserved
RP11-981G7.6
hsa-miR-29c-3p
0.847
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000606115
Biotype: lincRNA
Gene id: ENSG00000272505
Gene Name: RP11-981G7.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2576-2587
0.039
0
RP5-1074L1.4
hsa-miR-29c-3p
0.847
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000609909
Biotype: antisense
Gene id: ENSG00000273373
Gene Name: RP5-1074L1.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2692-2702
0.039
2
XLOC_007861
hsa-miR-29c-3p
0.847
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016482
Biotype: transcript isomorph
Gene id: XLOC_007861
Gene Name: XLOC_007861
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
627-642
0.039
0
XLOC_014197
hsa-miR-29c-3p
0.846
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029335
Biotype: transcript isomorph
Gene id: XLOC_014197
Gene Name: XLOC_014197
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4502-4513
0.015
1
8mer
4738-4757
0.012
0
7mer
3172-3187
0.007
5
7mer
737-756
0.003
0
6mer
3243-3255
0.001
4
RP11-468D11.1
hsa-miR-29c-3p
0.844
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000509745
Biotype: lincRNA
Gene id: ENSG00000248137
Gene Name: RP11-468D11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
488-506
0.038
0
RP11-945C19.4
hsa-miR-29c-3p
0.843
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000580845
Biotype: antisense
Gene id: ENSG00000264449
Gene Name: RP11-945C19.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
294-309
0.028
2
7mer
242-254
0.010
3
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