LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-29b-3p


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Gene
miRNA
Score
DIANA Links
XLOC_006058
hsa-miR-29b-3p
0.879
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013423
Biotype: transcript isomorph
Gene id: XLOC_006058
Gene Name: XLOC_006058
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
575-593
0.043
1
RP11-273B19.2
hsa-miR-29b-3p
0.879
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000512898
Biotype: lincRNA
Gene id: ENSG00000249727
Gene Name: RP11-273B19.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
114-139
0.043
0
RP11-930O11.1
hsa-miR-29b-3p
0.879
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000558120
Biotype: lincRNA
Gene id: ENSG00000259719
Gene Name: RP11-930O11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
138-158
0.027
5
7mer
237-256
0.008
1
6mer
229-239
0.005
2
6mer
502-525
0.003
0
MIR4534
hsa-miR-29b-3p
0.878
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623111
Biotype: sense_overlapping
Gene id: ENSG00000279010
Gene Name: MIR4534
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
14981-15001
0.007
1
8mer
52185-52210
0.005
1
7mer
15845-15864
0.003
1
8mer
20123-20142
0.003
1
7mer
51145-51164
0.002
0
6mer
53751-53766
0.002
1
8mer
50836-50852
0.002
0
7mer
24781-24806
0.002
2
6mer
8998-9019
0.002
3
6mer
29507-29526
0.002
7
6mer
31048-31057
0.002
1
6mer
53216-53237
0.001
Not Conserved
6mer
30398-30418
0.001
0
6mer
8770-8795
0.001
1
6mer
50804-50821
0.001
1
6mer
46402-46422
0.001
0
6mer
48728-48754
0.001
1
6mer
34980-35001
0.001
2
6mer
29100-29116
0.001
0
6mer
26826-26843
0.001
2
6mer
6895-6916
0.001
0
7mer
20140-20155
0.000
1
CTA-989H11.1
hsa-miR-29b-3p
0.877
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000609564
Biotype: lincRNA
Gene id: ENSG00000273366
Gene Name: CTA-989H11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
513-540
0.040
1
6mer
429-451
0.003
1
RP5-1186N24.3
hsa-miR-29b-3p
0.877
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000499525
Biotype: antisense
Gene id: ENSG00000246350
Gene Name: RP5-1186N24.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
Fibroblasts Lung Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1984-2004
0.039
0
7mer
183-206
0.004
0
LINC01095
hsa-miR-29b-3p
0.875
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000513023
Biotype: lincRNA
Gene id: ENSG00000248809
Gene Name: LINC01095
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
25-46
0.042
0
XLOC_012451
hsa-miR-29b-3p
0.873
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025223
Biotype: transcript isomorph
Gene id: XLOC_012451
Gene Name: XLOC_012451
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
612-636
0.022
3
7mer
312-332
0.020
3
XLOC_009958
hsa-miR-29b-3p
0.873
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020658
Biotype: transcript isomorph
Gene id: XLOC_009958
Gene Name: XLOC_009958
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1205-1222
0.034
2
7mer
667-681
0.008
0
XLOC_000647
hsa-miR-29b-3p
0.873
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00002272
Biotype: transcript isomorph
Gene id: XLOC_000647
Gene Name: XLOC_000647
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1203-1226
0.027
0
8mer
512-537
0.007
0
6mer
1037-1041
0.004
2
6mer
472-493
0.004
2
RP1-309I22.2
hsa-miR-29b-3p
0.872
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624184
Biotype: sense_overlapping
Gene id: ENSG00000279338
Gene Name: RP1-309I22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5206-5229
0.008
0
7mer
28393-28416
0.007
0
8mer
14859-14883
0.005
0
7mer
8451-8463
0.004
1
6mer
28843-28868
0.004
0
7mer
4735-4759
0.003
0
7mer
13614-13638
0.002
0
6mer
17563-17584
0.001
4
6mer
22309-22333
0.001
1
6mer
20781-20807
0.001
1
6mer
19538-19560
0.001
1
6mer
1774-1795
0.001
1
6mer
21448-21472
0.001
2
6mer
24518-24540
0.001
2
RP11-664I21.5
hsa-miR-29b-3p
0.869
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000524453
Biotype: antisense
Gene id: ENSG00000254568
Gene Name: RP11-664I21.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
580-595
0.023
0
8mer
486-504
0.015
2
6mer
483-487
0.004
1
LINC00969
hsa-miR-29b-3p
0.869
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000595086
Biotype: lincRNA
Gene id: ENSG00000242086
Gene Name: LINC00969
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
129-152
0.023
2
8mer
123-140
0.014
1
6mer
403-420
0.005
3
XLOC_000917
hsa-miR-29b-3p
0.867
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001584
Biotype: transcript isomorph
Gene id: XLOC_000917
Gene Name: XLOC_000917
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
25-44
0.012
2
7mer
533-549
0.008
0
6mer
434-449
0.007
6
6mer
289-313
0.005
4
6mer
55-80
0.005
2
6mer
1651-1660
0.003
0
6mer
1089-1109
0.002
1
LINC01095
hsa-miR-29b-3p
0.865
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505848
Biotype: lincRNA
Gene id: ENSG00000248809
Gene Name: LINC01095
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
296-317
0.041
0
LINC00969
hsa-miR-29b-3p
0.865
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000594446
Biotype: lincRNA
Gene id: ENSG00000242086
Gene Name: LINC00969
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
129-152
0.020
2
8mer
123-140
0.015
1
6mer
612-629
0.005
3
CTA-929C8.6
hsa-miR-29b-3p
0.864
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000426467
Biotype: lincRNA
Gene id: ENSG00000226741
Gene Name: CTA-929C8.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4278-4293
0.017
1
8mer
4521-4537
0.012
0
7mer
2947-2967
0.007
5
7mer
523-536
0.004
0
6mer
3014-3035
0.001
4
XLOC_003640
hsa-miR-29b-3p
0.864
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008192
Biotype: transcript isomorph
Gene id: XLOC_003640
Gene Name: XLOC_003640
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
45-63
0.041
1
RP11-525K10.1
hsa-miR-29b-3p
0.863
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000567851
Biotype: lincRNA
Gene id: ENSG00000260706
Gene Name: RP11-525K10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
497-513
0.036
0
6mer
29-50
0.005
2
LINC00969
hsa-miR-29b-3p
0.863
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000615212
Biotype: lincRNA
Gene id: ENSG00000242086
Gene Name: LINC00969
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
296-319
0.024
2
8mer
281-307
0.016
1
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