LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-29b-3p


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Gene
miRNA
Score
DIANA Links
RP5-905G11.3
hsa-miR-29b-3p
0.909
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000425405
Biotype: lincRNA
Gene id: ENSG00000233625
Gene Name: RP5-905G11.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
93-116
0.048
1
bP-2189O9.3
hsa-miR-29b-3p
0.908
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000623794
Biotype: lincRNA
Gene id: ENSG00000279579
Gene Name: bP-2189O9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
735-760
0.035
0
6mer
370-385
0.013
0
XLOC_012695
hsa-miR-29b-3p
0.907
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026345
Biotype: transcript isomorph
Gene id: XLOC_012695
Gene Name: XLOC_012695
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
53-78
0.048
1
CTA-363E19.2
hsa-miR-29b-3p
0.907
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000607036
Biotype: antisense
Gene id: ENSG00000272072
Gene Name: CTA-363E19.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
72-93
0.048
0
RP11-180K7.1
hsa-miR-29b-3p
0.906
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000519700
Biotype: retained_intron
Gene id: ENSG00000242770
Gene Name: RP11-180K7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
510-535
0.032
1
8mer
48-71
0.016
0
LINC00969
hsa-miR-29b-3p
0.906
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000618708
Biotype: lincRNA
Gene id: ENSG00000242086
Gene Name: LINC00969
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
559-582
0.029
2
8mer
543-570
0.019
1
XLOC_006442
hsa-miR-29b-3p
0.905
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013801
Biotype: transcript isomorph
Gene id: XLOC_006442
Gene Name: XLOC_006442
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
263-284
0.048
0
RP11-378J18.9
hsa-miR-29b-3p
0.903
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000619187
Biotype: lincRNA
Gene id: ENSG00000276997
Gene Name: RP11-378J18.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
113-139
0.047
1
RP11-108P20.4
hsa-miR-29b-3p
0.902
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000589476
Biotype: lincRNA
Gene id: ENSG00000267593
Gene Name: RP11-108P20.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
296-321
0.047
1
RP11-24M17.4
hsa-miR-29b-3p
0.902
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000569596
Biotype: lincRNA
Gene id: ENSG00000260288
Gene Name: RP11-24M17.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
157-174
0.047
0
LINC00969
hsa-miR-29b-3p
0.902
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000600288
Biotype: lincRNA
Gene id: ENSG00000242086
Gene Name: LINC00969
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
296-319
0.019
2
8mer
592-615
0.014
Not Conserved
8mer
281-307
0.014
1
LINC01015
hsa-miR-29b-3p
0.900
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000445296
Biotype: antisense
Gene id: ENSG00000224582
Gene Name: LINC01015
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
147-163
0.047
1
XLOC_012598
hsa-miR-29b-3p
0.899
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026224
Biotype: transcript isomorph
Gene id: XLOC_012598
Gene Name: XLOC_012598
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1730-1745
0.047
0
RP11-61K9.3
hsa-miR-29b-3p
0.899
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000620617
Biotype: lincRNA
Gene id: ENSG00000275964
Gene Name: RP11-61K9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1015-1031
0.045
4
6mer
297-318
0.002
0
RP11-1000B6.7
hsa-miR-29b-3p
0.897
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000616244
Biotype: sense_intronic
Gene id: ENSG00000276724
Gene Name: RP11-1000B6.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
208-226
0.046
0
AC012451.1
hsa-miR-29b-3p
0.897
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000412312
Biotype: lincRNA
Gene id: ENSG00000237532
Gene Name: AC012451.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
55-72
0.046
1
LINC01002
hsa-miR-29b-3p
0.897
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000622411
Biotype: lincRNA
Gene id: ENSG00000206082
Gene Name: LINC01002
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
254-280
0.046
1
RP11-33B1.3
hsa-miR-29b-3p
0.896
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000506942
Biotype: lincRNA
Gene id: ENSG00000250950
Gene Name: RP11-33B1.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
211-235
0.046
0
XLOC_008081
hsa-miR-29b-3p
0.895
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017254
Biotype: transcript isomorph
Gene id: XLOC_008081
Gene Name: XLOC_008081
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
255-269
0.046
1
LINC00969
hsa-miR-29b-3p
0.894
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000455807
Biotype: lincRNA
Gene id: ENSG00000242086
Gene Name: LINC00969
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
281-304
0.020
2
8mer
577-600
0.014
Not Conserved
8mer
275-292
0.012
1
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