LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-29b-3p


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Gene
miRNA
Score
DIANA Links
DKFZP434L187
hsa-miR-29b-3p
0.926
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000562624
Biotype: lincRNA
Gene id: ENSG00000225930
Gene Name: DKFZP434L187
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4205-4231
0.030
1
7mer
3662-3673
0.017
1
6mer
3932-3954
0.003
2
8mer+mismatch
1370-1388
0.002
1
XLOC_004451
hsa-miR-29b-3p
0.926
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009438
Biotype: transcript isomorph
Gene id: XLOC_004451
Gene Name: XLOC_004451
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
413-430
0.052
2
LINC00969
hsa-miR-29b-3p
0.925
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000599566
Biotype: lincRNA
Gene id: ENSG00000242086
Gene Name: LINC00969
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
129-152
0.024
2
8mer
123-140
0.015
1
8mer
425-448
0.012
Not Conserved
AC012146.7
hsa-miR-29b-3p
0.924
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000570712
Biotype: antisense
Gene id: ENSG00000234327
Gene Name: AC012146.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
73-98
0.035
1
7mer
223-238
0.011
0
6mer
32-52
0.005
1
RP11-215H22.1
hsa-miR-29b-3p
0.923
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000561816
Biotype: lincRNA
Gene id: ENSG00000261340
Gene Name: RP11-215H22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
861-874
0.051
1
XLOC_003663
hsa-miR-29b-3p
0.922
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008208
Biotype: transcript isomorph
Gene id: XLOC_003663
Gene Name: XLOC_003663
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
151-177
0.051
1
MIR6818
hsa-miR-29b-3p
0.921
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624945
Biotype: antisense
Gene id: ENSG00000279159
Gene Name: MIR6818
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
25958-25979
0.012
2
7mer
27253-27273
0.007
1
7mer
43737-43757
0.006
11
7mer
41546-41561
0.004
2
6mer
7624-7645
0.002
4
6mer
40639-40654
0.002
6
6mer
42446-42461
0.002
3
6mer
5598-5612
0.002
2
6mer
1479-1499
0.002
1
6mer
3655-3682
0.002
2
6mer
47639-47658
0.001
4
6mer
14145-14170
0.001
1
6mer
40276-40301
0.001
Not Conserved
6mer
18473-18494
0.001
1
6mer
37167-37183
0.001
1
6mer
45096-45104
0.001
0
6mer
11032-11047
0.001
Not Conserved
6mer
43285-43302
0.001
1
6mer
42971-42993
0.001
2
6mer
37089-37108
0.001
2
6mer
38121-38137
0.001
1
AP001432.14
hsa-miR-29b-3p
0.921
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000440629
Biotype: lincRNA
Gene id: ENSG00000242553
Gene Name: AP001432.14
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
322-346
0.051
1
AC118653.2
hsa-miR-29b-3p
0.919
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000442627
Biotype: lincRNA
Gene id: ENSG00000225818
Gene Name: AC118653.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
92-116
0.050
1
XLOC_006677
hsa-miR-29b-3p
0.919
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00014460
Biotype: transcript isomorph
Gene id: XLOC_006677
Gene Name: XLOC_006677
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1813-1833
0.005
2
6mer
1862-1880
0.005
1
6mer
1494-1512
0.003
2
6mer
1307-1323
0.002
2
6mer
1356-1369
0.002
1
6mer
1004-1023
0.002
2
6mer
1736-1749
0.002
Not Conserved
6mer
1653-1671
0.002
0
6mer
1412-1428
0.002
1
6mer
1467-1485
0.002
1
6mer
1258-1276
0.002
2
6mer
1202-1220
0.002
2
6mer
1626-1642
0.002
0
6mer
1571-1587
0.002
0
6mer
1060-1078
0.002
2
6mer
1384-1402
0.002
1
6mer
1118-1134
0.002
2
6mer
1548-1562
0.002
Not Conserved
6mer
1096-1109
0.002
2
6mer
1439-1458
0.002
0
6mer
1167-1187
0.002
1
6mer
1032-1048
0.001
2
6mer
976-992
0.001
1
XLOC_011723
hsa-miR-29b-3p
0.918
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024409
Biotype: transcript isomorph
Gene id: XLOC_011723
Gene Name: XLOC_011723
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
441-467
0.050
2
RP11-221J22.1
hsa-miR-29b-3p
0.918
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000465215
Biotype: lincRNA
Gene id: ENSG00000214407
Gene Name: RP11-221J22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
61-79
0.050
2
XLOC_001676
hsa-miR-29b-3p
0.918
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004889
Biotype: transcript isomorph
Gene id: XLOC_001676
Gene Name: XLOC_001676
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
558-573
0.046
0
7mer
661-682
0.005
Not Conserved
XLOC_008141
hsa-miR-29b-3p
0.915
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017307
Biotype: transcript isomorph
Gene id: XLOC_008141
Gene Name: XLOC_008141
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
108-128
0.050
0
LINC01197
hsa-miR-29b-3p
0.915
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000555332
Biotype: lincRNA
Gene id: ENSG00000248441
Gene Name: LINC01197
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3127-3136
0.036
2
8mer
3330-3348
0.014
0
RP4-734G22.3
hsa-miR-29b-3p
0.914
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000606802
Biotype: antisense
Gene id: ENSG00000272078
Gene Name: RP4-734G22.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
531-546
0.014
14
7mer
385-403
0.013
11
7mer
357-377
0.012
11
6mer
2669-2691
0.006
14
6mer
7202-7218
0.002
3
6mer
5349-5372
0.001
0
6mer
4583-4600
0.001
1
6mer
6816-6842
0.001
1
AC105402.4
hsa-miR-29b-3p
0.913
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000601658
Biotype: antisense
Gene id: ENSG00000231079
Gene Name: AC105402.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
20-38
0.031
1
8mer
359-383
0.019
1
RP11-582E3.6
hsa-miR-29b-3p
0.912
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000620519
Biotype: lincRNA
Gene id: ENSG00000275764
Gene Name: RP11-582E3.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1617-1643
0.049
1
RP11-945C19.4
hsa-miR-29b-3p
0.912
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000582939
Biotype: antisense
Gene id: ENSG00000264449
Gene Name: RP11-945C19.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
439-463
0.038
2
7mer
297-309
0.010
3
RP11-96B2.1
hsa-miR-29b-3p
0.911
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000530350
Biotype: lincRNA
Gene id: ENSG00000255325
Gene Name: RP11-96B2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
14-26
0.049
1
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