LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-29b-3p


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Gene
miRNA
Score
DIANA Links
LINC00674
hsa-miR-29b-3p
0.949
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000620266
Biotype: lincRNA
Gene id: ENSG00000278730
Gene Name: LINC00674
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2871-2898
0.053
0
7mer
2538-2552
0.006
0
XLOC_006031
hsa-miR-29b-3p
0.949
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00012987
Biotype: transcript isomorph
Gene id: XLOC_006031
Gene Name: XLOC_006031
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
676-699
0.059
0
XLOC_006111
hsa-miR-29b-3p
0.949
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013454
Biotype: transcript isomorph
Gene id: XLOC_006111
Gene Name: XLOC_006111
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
923-945
0.034
1
7mer
366-382
0.013
0
8mer+mismatch
833-856
0.012
0
LOC101928767
hsa-miR-29b-3p
0.946
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: NR_110155.1
Biotype: lincRNA
Gene id: NR_110155.1 (gene)
Gene Name: LOC101928767
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
168-188
0.057
0
RP11-473O4.5
hsa-miR-29b-3p
0.945
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000524100
Biotype: antisense
Gene id: ENSG00000254317
Gene Name: RP11-473O4.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
303-327
0.053
Not Conserved
6mer
629-651
0.004
0
RP4-630A11.3
hsa-miR-29b-3p
0.943
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000429871
Biotype: sense_intronic
Gene id: ENSG00000237852
Gene Name: RP4-630A11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
265-280
0.057
1
MLLT4-AS1
hsa-miR-29b-3p
0.942
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000359760
Biotype: lincRNA
Gene id: ENSG00000198221
Gene Name: MLLT4-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2186-2195
0.009
1
7mer
2018-2044
0.007
1
8mer
1796-1822
0.006
0
7mer
2122-2143
0.004
0
7mer
1821-1845
0.004
1
7mer
1993-2003
0.004
Not Conserved
6mer
2077-2096
0.003
1
7mer
1632-1656
0.002
0
6mer
2057-2079
0.002
0
7mer
1443-1465
0.002
0
7mer
1488-1510
0.002
0
6mer
1919-1941
0.002
1
6mer
1954-1980
0.002
1
6mer
1877-1894
0.001
0
6mer
1857-1879
0.001
1
6mer
1757-1781
0.001
0
6mer
1607-1620
0.001
0
7mer
1463-1473
0.001
0
6mer
1668-1683
0.001
0
6mer
1712-1731
0.001
Not Conserved
LOC100506639
hsa-miR-29b-3p
0.941
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_102752.1
Biotype: sense
Gene id: NR_102752.1 (gene)
Gene Name: LOC100506639
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
72-97
0.056
1
TUG1
hsa-miR-29b-3p
0.941
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000540687
Biotype: antisense
Gene id: ENSG00000253352
Gene Name: TUG1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
34-55
0.033
6
7mer
415-440
0.023
9
RP11-314B1.2
hsa-miR-29b-3p
0.940
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000609089
Biotype: lincRNA
Gene id: ENSG00000273301
Gene Name: RP11-314B1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
494-511
0.056
9
RP11-556E13.1
hsa-miR-29b-3p
0.939
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000443523
Biotype: antisense
Gene id: ENSG00000228651
Gene Name: RP11-556E13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
239-260
0.055
3
LINC01002
hsa-miR-29b-3p
0.934
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000619150
Biotype: lincRNA
Gene id: ENSG00000206082
Gene Name: LINC01002
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
113-139
0.054
1
XLOC_004366
hsa-miR-29b-3p
0.934
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009941
Biotype: transcript isomorph
Gene id: XLOC_004366
Gene Name: XLOC_004366
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
7698-7716
0.040
1
8mer
2107-2132
0.004
1
6mer
9491-9514
0.003
1
7mer
3449-3469
0.003
1
6mer
1965-1987
0.002
1
7mer
2003-2023
0.002
0
6mer
3998-4013
0.001
0
6mer
1659-1685
0.001
Not Conserved
RP11-435J9.2
hsa-miR-29b-3p
0.934
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000611703
Biotype: lincRNA
Gene id: ENSG00000274340
Gene Name: RP11-435J9.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
169-184
0.054
3
AL133245.2
hsa-miR-29b-3p
0.933
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000608925
Biotype: lincRNA
Gene id: ENSG00000272754
Gene Name: AL133245.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
256-280
0.029
1
7mer
250-267
0.024
1
MLLT4-AS1
hsa-miR-29b-3p
0.932
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_027906.1
Biotype: lincRNA
Gene id: NR_027906.1 (gene)
Gene Name: MLLT4-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2172-2181
0.007
1
7mer
2004-2030
0.006
1
8mer
1782-1808
0.006
0
7mer
2243-2264
0.005
0
7mer
2108-2129
0.004
0
7mer
1807-1831
0.003
1
7mer
1979-1989
0.003
Not Conserved
6mer
2063-2082
0.002
1
7mer
1618-1642
0.002
0
7mer
1474-1496
0.002
0
6mer
2043-2065
0.002
0
6mer
1905-1927
0.002
1
7mer
1429-1451
0.001
0
6mer
1940-1966
0.001
1
6mer
1863-1880
0.001
0
6mer
1843-1865
0.001
1
6mer
1743-1767
0.001
0
7mer
1449-1459
0.001
0
6mer
1593-1606
0.001
0
6mer
1654-1669
0.001
0
6mer
1698-1717
0.001
Not Conserved
AC010975.1
hsa-miR-29b-3p
0.932
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000443301
Biotype: antisense
Gene id: ENSG00000229385
Gene Name: AC010975.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
438-462
0.053
2
RP11-678G14.4
hsa-miR-29b-3p
0.930
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594927
Biotype: lincRNA
Gene id: ENSG00000268240
Gene Name: RP11-678G14.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1615-1638
0.035
0
8mer
1154-1173
0.014
0
6mer
665-689
0.005
0
RP11-354M20.3
hsa-miR-29b-3p
0.928
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000451610
Biotype: antisense
Gene id: ENSG00000231104
Gene Name: RP11-354M20.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
745-771
0.049
3
6mer
723-739
0.004
1
RP11-677I18.3
hsa-miR-29b-3p
0.927
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000532422
Biotype: antisense
Gene id: ENSG00000254433
Gene Name: RP11-677I18.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
447-468
0.052
3
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