LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-29b-3p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
THUMPD3-AS1
hsa-miR-29b-3p
0.965
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000520447
Biotype: antisense
Gene id: ENSG00000206573
Gene Name: THUMPD3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1436-1458
0.065
0
XLOC_007942
hsa-miR-29b-3p
0.965
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00016971
Biotype: transcript isomorph
Gene id: XLOC_007942
Gene Name: XLOC_007942
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
76-99
0.059
2
6mer
416-440
0.006
3
THUMPD3-AS1
hsa-miR-29b-3p
0.963
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_027007.2
Biotype: lincRNA
Gene id: NR_027007.2 (gene)
Gene Name: THUMPD3-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1466-1488
0.064
0
THUMPD3-AS1
hsa-miR-29b-3p
0.963
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000522525
Biotype: antisense
Gene id: ENSG00000206573
Gene Name: THUMPD3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1470-1492
0.064
0
CTB-114C7.4
hsa-miR-29b-3p
0.962
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000511921
Biotype: lincRNA
Gene id: ENSG00000250274
Gene Name: CTB-114C7.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Placenta Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2014-2041
0.058
1
6mer
1067-1090
0.003
2
6mer
1515-1529
0.003
0
XLOC_013779
hsa-miR-29b-3p
0.962
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028429
Biotype: transcript isomorph
Gene id: XLOC_013779
Gene Name: XLOC_013779
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3051-3072
0.024
1
7mer
2998-3019
0.010
1
7mer
2889-2915
0.007
1
6mer
3104-3130
0.006
1
7mer
1113-1140
0.004
0
8mer
283-304
0.004
Not Conserved
6mer
389-411
0.003
0
6mer
604-625
0.002
Not Conserved
7mer
1272-1289
0.002
Not Conserved
6mer
498-524
0.001
Not Conserved
6mer
796-823
0.001
Not Conserved
6mer
445-466
0.001
Not Conserved
XLOC_012257
hsa-miR-29b-3p
0.962
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025439
Biotype: transcript isomorph
Gene id: XLOC_012257
Gene Name: XLOC_012257
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
344-360
0.063
0
AC019117.1
hsa-miR-29b-3p
0.960
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000419463
Biotype: lincRNA
Gene id: ENSG00000236318
Gene Name: AC019117.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
93-102
0.063
0
RP11-152O14.1
hsa-miR-29b-3p
0.959
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000566439
Biotype: lincRNA
Gene id: ENSG00000261749
Gene Name: RP11-152O14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
51-77
0.062
2
RP11-326K13.4
hsa-miR-29b-3p
0.959
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000580420
Biotype: antisense
Gene id: ENSG00000263823
Gene Name: RP11-326K13.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1545-1558
0.060
1
6mer
829-855
0.002
1
RP11-74E22.8
hsa-miR-29b-3p
0.959
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000614400
Biotype: lincRNA
Gene id: ENSG00000277200
Gene Name: RP11-74E22.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2750-2770
0.060
4
6mer
1010-1029
0.002
2
6mer
940-962
0.001
0
AC005154.6
hsa-miR-29b-3p
0.959
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000580440
Biotype: antisense
Gene id: ENSG00000196295
Gene Name: AC005154.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
245-270
0.032
1
8mer
259-279
0.021
0
7mer
299-326
0.009
1
PWRN2
hsa-miR-29b-3p
0.957
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: NR_026647.1
Biotype: lincRNA
Gene id: NR_026647.1 (gene)
Gene Name: PWRN2
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4741-4757
0.032
0
8mer
4490-4507
0.022
0
6mer
1150-1158
0.005
1
6mer
2035-2059
0.002
0
LOC102467079
hsa-miR-29b-3p
0.956
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: NR_104655.1
Biotype: lincRNA
Gene id: NR_104655.1 (gene)
Gene Name: LOC102467079
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
50-76
0.061
2
XLOC_011881
hsa-miR-29b-3p
0.956
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024263
Biotype: transcript isomorph
Gene id: XLOC_011881
Gene Name: XLOC_011881
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
372-398
0.061
1
CTD-2135D7.4
hsa-miR-29b-3p
0.955
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000575767
Biotype: lincRNA
Gene id: ENSG00000261856
Gene Name: CTD-2135D7.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
373-399
0.061
1
RP11-493L12.4
hsa-miR-29b-3p
0.954
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000547777
Biotype: lincRNA
Gene id: ENSG00000258181
Gene Name: RP11-493L12.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
174-197
0.060
1
RP11-867G23.3
hsa-miR-29b-3p
0.953
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000501708
Biotype: lincRNA
Gene id: ENSG00000245156
Gene Name: RP11-867G23.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2353-2379
0.045
8
8mer
1206-1227
0.015
1
AC138035.2
hsa-miR-29b-3p
0.951
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000499986
Biotype: lincRNA
Gene id: ENSG00000238035
Gene Name: AC138035.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
454-480
0.036
1
6mer
684-705
0.013
1
6mer
769-788
0.011
1
MUC19
hsa-miR-29b-3p
0.951
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000454784
Biotype: processed_transcript
Gene id: ENSG00000205592
Gene Name: MUC19
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
525-542
0.017
1
7mer
24203-24225
0.012
5
7mer
72-95
0.011
1
8mer
624-641
0.010
0
7mer
380-391
0.006
1
7mer
5203-5229
0.002
1
6mer
9181-9207
0.001
0
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept