LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-29b-3p


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Gene
miRNA
Score
DIANA Links
THUMPD3-AS1
hsa-miR-29b-3p
0.984
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000521267
Biotype: antisense
Gene id: ENSG00000206573
Gene Name: THUMPD3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
466-488
0.078
0
XLOC_006128
hsa-miR-29b-3p
0.983
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013480
Biotype: transcript isomorph
Gene id: XLOC_006128
Gene Name: XLOC_006128
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
234-246
0.077
1
MIR4697HG
hsa-miR-29b-3p
0.983
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_024344.1
Biotype: lincRNA
Gene id: NR_024344.1 (gene)
Gene Name: MIR4697HG
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3950-3969
0.032
9
8mer
1644-1666
0.012
10
7mer
2703-2720
0.010
7
6mer
709-726
0.008
9
6mer
1215-1231
0.005
8
6mer
1655-1670
0.005
11
6mer
4903-4914
0.003
1
7mer
3897-3919
0.001
0
THUMPD3-AS1
hsa-miR-29b-3p
0.982
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000489616
Biotype: antisense
Gene id: ENSG00000206573
Gene Name: THUMPD3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
181-203
0.076
0
THUMPD3-AS1
hsa-miR-29b-3p
0.978
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000468186
Biotype: antisense
Gene id: ENSG00000206573
Gene Name: THUMPD3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
407-429
0.072
0
THUMPD3-AS1
hsa-miR-29b-3p
0.977
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000481221
Biotype: antisense
Gene id: ENSG00000206573
Gene Name: THUMPD3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
231-253
0.072
0
THUMPD3-AS1
hsa-miR-29b-3p
0.976
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000519043
Biotype: antisense
Gene id: ENSG00000206573
Gene Name: THUMPD3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
730-752
0.072
0
NEAT1
hsa-miR-29b-3p
0.976
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000501122
Biotype: lincRNA
Gene id: ENSG00000245532
Gene Name: NEAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
8512-8530
0.026
1
9mer
16034-16047
0.019
1
8mer
5047-5066
0.012
0
7mer
21823-21847
0.005
3
8mer
7056-7073
0.004
0
7mer
16346-16363
0.003
1
6mer
22087-22109
0.002
1
6mer
4480-4496
0.001
1
KCNQ1OT1
hsa-miR-29b-3p
0.976
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000597346
Biotype: antisense
Gene id: ENSG00000269821
Gene Name: KCNQ1OT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
27090-27116
0.008
0
8mer
6287-6307
0.006
1
7mer
84972-84985
0.004
1
7mer
55048-55062
0.004
1
7mer
36490-36504
0.004
0
7mer
81527-81553
0.003
0
7mer
63650-63671
0.003
1
7mer
83672-83692
0.003
1
7mer
47317-47341
0.002
2
6mer
20070-20095
0.002
1
6mer
5256-5268
0.002
1
6mer
79682-79706
0.002
3
6mer
40521-40539
0.002
1
6mer
72796-72807
0.002
1
6mer
67292-67311
0.002
1
6mer
50177-50199
0.002
2
7mer
65498-65517
0.002
1
6mer
14977-15000
0.002
Not Conserved
6mer
60704-60730
0.001
2
6mer
7119-7143
0.001
1
6mer
58007-58030
0.001
2
6mer
1501-1513
0.001
1
6mer
71549-71559
0.001
0
6mer
82178-82201
0.001
0
6mer
40100-40112
0.001
Not Conserved
6mer
78272-78291
0.001
1
6mer
26507-26517
0.001
0
7mer
76090-76117
0.001
Not Conserved
6mer
59601-59621
0.001
1
6mer
57030-57054
0.001
0
6mer
57893-57907
0.001
2
7mer
63557-63575
0.001
1
LINC00680
hsa-miR-29b-3p
0.975
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000422882
Biotype: lincRNA
Gene id: ENSG00000215190
Gene Name: LINC00680
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1393-1410
0.056
0
7mer
1214-1233
0.015
0
LINC00265
hsa-miR-29b-3p
0.973
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000448955
Biotype: lincRNA
Gene id: ENSG00000188185
Gene Name: LINC00265
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
70-88
0.050
1
6mer
415-436
0.013
1
6mer
300-319
0.006
0
XLOC_013778
hsa-miR-29b-3p
0.971
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028426
Biotype: transcript isomorph
Gene id: XLOC_013778
Gene Name: XLOC_013778
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
4031-4057
0.007
0
7mer
437-455
0.005
0
8mer
967-988
0.005
1
8mer
2625-2644
0.004
Not Conserved
7mer
285-311
0.004
0
8mer
1218-1239
0.004
1
7mer
3246-3267
0.004
0
9mer
4430-4456
0.003
Not Conserved
6mer
336-363
0.003
1
7mer
1466-1479
0.003
1
7mer
4694-4720
0.003
Not Conserved
7mer
1073-1099
0.003
1
7mer
2153-2174
0.002
Not Conserved
7mer
4483-4509
0.002
0
7mer
1271-1296
0.001
1
7mer
1020-1046
0.001
0
7mer
2787-2813
0.001
Not Conserved
6mer
597-623
0.001
Not Conserved
6mer
862-888
0.001
0
6mer
3661-3682
0.001
0
6mer
809-835
0.001
0
6mer
650-671
0.001
0
7mer
1890-1916
0.001
Not Conserved
6mer
4190-4216
0.001
Not Conserved
7mer
2573-2599
0.001
Not Conserved
7mer
3872-3896
0.001
0
7mer
2100-2124
0.001
Not Conserved
7mer
1320-1341
0.001
Not Conserved
7mer
4137-4158
0.001
Not Conserved
7mer
1996-2016
0.001
Not Conserved
7mer
2049-2070
0.001
Not Conserved
6mer
3894-3917
0.001
0
6mer
4641-4667
0.000
0
6mer
1371-1398
0.000
1
6mer
1418-1444
0.000
0
THUMPD3-AS1
hsa-miR-29b-3p
0.971
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000522221
Biotype: antisense
Gene id: ENSG00000206573
Gene Name: THUMPD3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
404-426
0.068
0
LOC100128288
hsa-miR-29b-3p
0.970
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: NR_024447.1
Biotype: lincRNA
Gene id: NR_024447.1 (gene)
Gene Name: LOC100128288
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2089-2108
0.068
1
POLR2J4
hsa-miR-29b-3p
0.970
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000427076
Biotype: processed_transcript
Gene id: ENSG00000214783
Gene Name: POLR2J4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
58-80
0.053
1
7mer
2311-2337
0.006
1
6mer
6258-6282
0.004
1
6mer
690-712
0.002
0
6mer
5758-5780
0.001
Not Conserved
6mer
4122-4139
0.001
0
6mer
4986-5006
0.001
2
XLOC_011252
hsa-miR-29b-3p
0.968
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023404
Biotype: transcript isomorph
Gene id: XLOC_011252
Gene Name: XLOC_011252
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
55-74
0.067
0
RP11-230B22.1
hsa-miR-29b-3p
0.967
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000453229
Biotype: antisense
Gene id: ENSG00000235545
Gene Name: RP11-230B22.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
999-1017
0.066
1
XLOC_006118
hsa-miR-29b-3p
0.967
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013467
Biotype: transcript isomorph
Gene id: XLOC_006118
Gene Name: XLOC_006118
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2378-2404
0.066
1
LOC102659288
hsa-miR-29b-3p
0.966
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_110015.1
Biotype: lincRNA
Gene id: NR_110015.1 (gene)
Gene Name: LOC102659288
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
43-52
0.065
0
LOC102659288
hsa-miR-29b-3p
0.966
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_110014.1
Biotype: lincRNA
Gene id: NR_110014.1 (gene)
Gene Name: LOC102659288
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
43-52
0.065
0
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