LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-29b-3p


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Gene
miRNA
Score
DIANA Links
XLOC_004802
hsa-miR-29b-3p
0.862
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010319
Biotype: transcript isomorph
Gene id: XLOC_004802
Gene Name: XLOC_004802
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
213-226
0.041
1
RP11-634B7.4
hsa-miR-29b-3p
0.862
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000582218
Biotype: antisense
Gene id: ENSG00000235749
Gene Name: RP11-634B7.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
55-72
0.036
0
6mer
315-336
0.005
0
MIR4458HG
hsa-miR-29b-3p
0.862
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000502001
Biotype: lincRNA
Gene id: ENSG00000247516
Gene Name: MIR4458HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
848-868
0.041
Not Conserved
RP11-540O11.8
hsa-miR-29b-3p
0.860
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000624853
Biotype: sense_intronic
Gene id: ENSG00000280036
Gene Name: RP11-540O11.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
640-664
0.040
5
KB-1125A3.12
hsa-miR-29b-3p
0.859
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624923
Biotype: antisense
Gene id: ENSG00000279467
Gene Name: KB-1125A3.12
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7357-7380
0.016
0
8mer
7052-7071
0.012
0
8mer
4838-4857
0.005
0
7mer
7216-7238
0.004
0
7mer
3182-3199
0.002
0
6mer
5276-5301
0.001
0
6mer
1133-1151
0.001
0
XLOC_007861
hsa-miR-29b-3p
0.859
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016482
Biotype: transcript isomorph
Gene id: XLOC_007861
Gene Name: XLOC_007861
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
627-641
0.040
0
LINC00969
hsa-miR-29b-3p
0.857
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000432194
Biotype: lincRNA
Gene id: ENSG00000242086
Gene Name: LINC00969
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
180-203
0.023
2
8mer
174-191
0.017
1
CTA-732E4.1
hsa-miR-29b-3p
0.857
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624817
Biotype: antisense
Gene id: ENSG00000280258
Gene Name: CTA-732E4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
38-61
0.040
1
XLOC_014197
hsa-miR-29b-3p
0.857
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029335
Biotype: transcript isomorph
Gene id: XLOC_014197
Gene Name: XLOC_014197
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4498-4513
0.017
1
8mer
4741-4757
0.012
0
7mer
3167-3187
0.007
5
7mer
743-756
0.003
0
6mer
3234-3255
0.001
4
XLOC_005175
hsa-miR-29b-3p
0.857
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011696
Biotype: transcript isomorph
Gene id: XLOC_005175
Gene Name: XLOC_005175
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
- Kidney Normal/Primary
A549 Lung Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
40-59
0.040
1
XLOC_008658
hsa-miR-29b-3p
0.856
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018379
Biotype: transcript isomorph
Gene id: XLOC_008658
Gene Name: XLOC_008658
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
195-217
0.024
2
7mer
325-343
0.016
1
CASC7
hsa-miR-29b-3p
0.855
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000560295
Biotype: lincRNA
Gene id: ENSG00000259758
Gene Name: CASC7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2141-2152
0.016
10
7mer
4020-4032
0.009
6
7mer
5013-5030
0.005
3
7mer
1595-1610
0.004
3
6mer
6013-6035
0.004
8
6mer
4639-4653
0.001
3
RP11-468D11.1
hsa-miR-29b-3p
0.855
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000509745
Biotype: lincRNA
Gene id: ENSG00000248137
Gene Name: RP11-468D11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
488-506
0.040
0
AC004988.1
hsa-miR-29b-3p
0.853
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000415237
Biotype: antisense
Gene id: ENSG00000203446
Gene Name: AC004988.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
463-486
0.039
3
LINC00969
hsa-miR-29b-3p
0.852
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000438608
Biotype: lincRNA
Gene id: ENSG00000242086
Gene Name: LINC00969
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
328-351
0.024
2
8mer
313-339
0.016
1
LINC01206
hsa-miR-29b-3p
0.852
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000482787
Biotype: lincRNA
Gene id: ENSG00000242512
Gene Name: LINC01206
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
9356-9380
0.031
1
8mer
4385-4398
0.005
1
7mer
1627-1641
0.004
1
XLOC_007830
hsa-miR-29b-3p
0.849
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016465
Biotype: transcript isomorph
Gene id: XLOC_007830
Gene Name: XLOC_007830
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Brain Normal/Primary
HeLa Cervix Cancer/Malignant
- Kidney Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
852-879
0.036
1
6mer
556-574
0.003
0
RP11-242P2.2
hsa-miR-29b-3p
0.849
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000553812
Biotype: antisense
Gene id: ENSG00000259106
Gene Name: RP11-242P2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
265-278
0.039
1
RP5-1074L1.4
hsa-miR-29b-3p
0.847
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000609909
Biotype: antisense
Gene id: ENSG00000273373
Gene Name: RP5-1074L1.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2692-2702
0.039
2
RP11-981G7.6
hsa-miR-29b-3p
0.846
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000606115
Biotype: lincRNA
Gene id: ENSG00000272505
Gene Name: RP11-981G7.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2577-2587
0.039
0
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