LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-29a-3p


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Gene
miRNA
Score
DIANA Links
RP11-488I20.3
hsa-miR-29a-3p
0.877
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000561756
Biotype: lincRNA
Gene id: ENSG00000259841
Gene Name: RP11-488I20.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
403-425
0.038
0
6mer
434-460
0.005
0
LINC01095
hsa-miR-29a-3p
0.877
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505848
Biotype: lincRNA
Gene id: ENSG00000248809
Gene Name: LINC01095
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
296-314
0.043
0
RP11-111E14.1
hsa-miR-29a-3p
0.874
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558050
Biotype: antisense
Gene id: ENSG00000259351
Gene Name: RP11-111E14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
934-955
0.029
0
7mer
149-174
0.014
Not Conserved
LINC00969
hsa-miR-29a-3p
0.874
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000432194
Biotype: lincRNA
Gene id: ENSG00000242086
Gene Name: LINC00969
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
176-203
0.024
2
8mer
176-191
0.018
1
MIR4534
hsa-miR-29a-3p
0.873
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623111
Biotype: sense_overlapping
Gene id: ENSG00000279010
Gene Name: MIR4534
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
14982-15001
0.007
1
8mer
52192-52210
0.006
1
7mer
15840-15864
0.003
1
8mer
20119-20142
0.003
1
7mer
51145-51164
0.002
0
6mer
53746-53766
0.002
1
6mer
8995-9019
0.002
3
8mer
50839-50852
0.002
0
6mer
30393-30418
0.002
2
6mer
29514-29526
0.002
6
6mer
31038-31057
0.001
1
7mer
24785-24806
0.001
2
6mer
53216-53237
0.001
Not Conserved
6mer
8791-8795
0.001
1
6mer
46406-46422
0.001
0
6mer
50804-50821
0.001
1
6mer
26820-26843
0.001
2
6mer
29098-29116
0.001
0
6mer
48734-48754
0.001
1
6mer
34983-35001
0.001
2
6mer
6898-6916
0.001
0
7mer
20140-20155
0.000
1
RP11-930O11.1
hsa-miR-29a-3p
0.872
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000558120
Biotype: lincRNA
Gene id: ENSG00000259719
Gene Name: RP11-930O11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
133-158
0.026
5
7mer
237-256
0.008
1
6mer
228-239
0.005
2
6mer
506-525
0.004
0
LINC00969
hsa-miR-29a-3p
0.872
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000595086
Biotype: lincRNA
Gene id: ENSG00000242086
Gene Name: LINC00969
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
125-152
0.024
2
8mer
125-140
0.015
1
6mer
399-420
0.003
1
CASC7
hsa-miR-29a-3p
0.872
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000560295
Biotype: lincRNA
Gene id: ENSG00000259758
Gene Name: CASC7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2141-2164
0.018
10
7mer
4020-4047
0.010
6
7mer
5013-5031
0.005
3
6mer
6013-6032
0.005
9
7mer
1595-1610
0.003
2
6mer
4639-4662
0.001
3
XLOC_005175
hsa-miR-29a-3p
0.871
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011696
Biotype: transcript isomorph
Gene id: XLOC_005175
Gene Name: XLOC_005175
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
- Kidney Normal/Primary
A549 Lung Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
42-59
0.042
1
RP11-945C19.4
hsa-miR-29a-3p
0.869
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000582939
Biotype: antisense
Gene id: ENSG00000264449
Gene Name: RP11-945C19.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
448-463
0.031
2
7mer
284-309
0.010
3
LINC00969
hsa-miR-29a-3p
0.868
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000438608
Biotype: lincRNA
Gene id: ENSG00000242086
Gene Name: LINC00969
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
324-351
0.025
2
8mer
324-339
0.016
1
LNX1-AS2
hsa-miR-29a-3p
0.868
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000509974
Biotype: sense_intronic
Gene id: ENSG00000248494
Gene Name: LNX1-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
294-310
0.041
0
LINC00969
hsa-miR-29a-3p
0.865
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000594446
Biotype: lincRNA
Gene id: ENSG00000242086
Gene Name: LINC00969
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
125-152
0.021
2
8mer
125-140
0.016
1
6mer
608-629
0.003
1
XLOC_004802
hsa-miR-29a-3p
0.864
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010319
Biotype: transcript isomorph
Gene id: XLOC_004802
Gene Name: XLOC_004802
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
213-227
0.041
1
XLOC_000917
hsa-miR-29a-3p
0.862
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001584
Biotype: transcript isomorph
Gene id: XLOC_000917
Gene Name: XLOC_000917
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
25-36
0.012
2
7mer
533-550
0.008
0
6mer
434-450
0.007
6
6mer
289-314
0.005
4
6mer
55-79
0.005
2
6mer
1651-1668
0.002
0
6mer
1089-1113
0.001
1
KB-1125A3.12
hsa-miR-29a-3p
0.862
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624923
Biotype: antisense
Gene id: ENSG00000279467
Gene Name: KB-1125A3.12
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7357-7380
0.015
0
8mer
7052-7068
0.012
0
7mer
7216-7239
0.005
1
8mer
4838-4857
0.005
0
7mer
3182-3199
0.002
0
6mer
5276-5302
0.001
0
6mer
1133-1148
0.001
0
XLOC_007830
hsa-miR-29a-3p
0.862
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016465
Biotype: transcript isomorph
Gene id: XLOC_007830
Gene Name: XLOC_007830
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Brain Normal/Primary
HeLa Cervix Cancer/Malignant
- Kidney Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
852-877
0.037
1
6mer
556-574
0.003
0
XLOC_008658
hsa-miR-29a-3p
0.859
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018379
Biotype: transcript isomorph
Gene id: XLOC_008658
Gene Name: XLOC_008658
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
192-217
0.024
2
7mer
319-343
0.016
1
RP11-677I18.3
hsa-miR-29a-3p
0.859
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000532422
Biotype: antisense
Gene id: ENSG00000254433
Gene Name: RP11-677I18.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
447-465
0.040
3
RP4-676J13.2
hsa-miR-29a-3p
0.859
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000420766
Biotype: lincRNA
Gene id: ENSG00000228679
Gene Name: RP4-676J13.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
123-144
0.040
1
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