LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-29a-3p


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Gene
miRNA
Score
DIANA Links
LINC00969
hsa-miR-29a-3p
0.902
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000455807
Biotype: lincRNA
Gene id: ENSG00000242086
Gene Name: LINC00969
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
277-304
0.021
2
8mer
277-292
0.013
1
8mer
585-600
0.013
Not Conserved
LINC01015
hsa-miR-29a-3p
0.902
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000445296
Biotype: antisense
Gene id: ENSG00000224582
Gene Name: LINC01015
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
146-163
0.047
1
XLOC_012598
hsa-miR-29a-3p
0.902
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026224
Biotype: transcript isomorph
Gene id: XLOC_012598
Gene Name: XLOC_012598
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1730-1745
0.047
0
XLOC_011723
hsa-miR-29a-3p
0.902
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024409
Biotype: transcript isomorph
Gene id: XLOC_011723
Gene Name: XLOC_011723
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
450-467
0.047
2
LINC00969
hsa-miR-29a-3p
0.902
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000451216
Biotype: lincRNA
Gene id: ENSG00000242086
Gene Name: LINC00969
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
261-288
0.031
2
8mer
261-276
0.016
1
XLOC_008081
hsa-miR-29a-3p
0.902
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017254
Biotype: transcript isomorph
Gene id: XLOC_008081
Gene Name: XLOC_008081
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
255-269
0.047
1
RP4-734G22.3
hsa-miR-29a-3p
0.901
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000606802
Biotype: antisense
Gene id: ENSG00000272078
Gene Name: RP4-734G22.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
368-377
0.013
11
7mer
387-403
0.013
11
7mer
519-546
0.011
13
6mer
2678-2691
0.006
14
6mer
7199-7218
0.001
3
6mer
5367-5372
0.001
0
6mer
4583-4600
0.001
1
6mer
6817-6842
0.001
1
MLLT4-AS1
hsa-miR-29a-3p
0.900
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_027906.1
Biotype: lincRNA
Gene id: NR_027906.1 (gene)
Gene Name: MLLT4-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2004-2018
0.006
1
7mer
2172-2186
0.005
1
8mer
1782-1802
0.005
0
7mer
2108-2122
0.004
0
7mer
2243-2268
0.004
0
7mer
1807-1821
0.003
1
7mer
1979-2002
0.002
Not Conserved
6mer
2043-2069
0.002
0
6mer
2063-2078
0.002
1
7mer
1618-1643
0.002
0
7mer
1474-1489
0.002
0
7mer
1429-1451
0.001
0
6mer
1863-1880
0.001
0
6mer
1905-1924
0.001
1
6mer
1940-1954
0.001
1
6mer
1843-1865
0.001
1
6mer
1743-1757
0.001
0
7mer
1449-1464
0.001
0
6mer
1654-1669
0.001
0
6mer
1698-1719
0.001
Not Conserved
6mer
1593-1613
0.001
0
RP11-374M1.4
hsa-miR-29a-3p
0.900
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000421848
Biotype: lincRNA
Gene id: ENSG00000223379
Gene Name: RP11-374M1.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Lung Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
250-272
0.047
4
RP11-354M20.3
hsa-miR-29a-3p
0.897
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000451610
Biotype: antisense
Gene id: ENSG00000231104
Gene Name: RP11-354M20.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
748-771
0.042
3
6mer
723-739
0.004
1
CTA-989H11.1
hsa-miR-29a-3p
0.897
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000609564
Biotype: lincRNA
Gene id: ENSG00000273366
Gene Name: CTA-989H11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
520-540
0.043
1
6mer
432-451
0.003
1
RP11-180K7.1
hsa-miR-29a-3p
0.896
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000519700
Biotype: retained_intron
Gene id: ENSG00000242770
Gene Name: RP11-180K7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
517-535
0.029
1
8mer
46-71
0.017
0
LINC01002
hsa-miR-29a-3p
0.896
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000622411
Biotype: lincRNA
Gene id: ENSG00000206082
Gene Name: LINC01002
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
254-272
0.046
1
RP11-556E13.1
hsa-miR-29a-3p
0.895
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000443523
Biotype: antisense
Gene id: ENSG00000228651
Gene Name: RP11-556E13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
239-258
0.046
3
INTS6-AS1
hsa-miR-29a-3p
0.894
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000596303
Biotype: antisense
Gene id: ENSG00000236778
Gene Name: INTS6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
541-555
0.046
1
XLOC_006677
hsa-miR-29a-3p
0.894
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00014460
Biotype: transcript isomorph
Gene id: XLOC_006677
Gene Name: XLOC_006677
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1813-1831
0.005
2
6mer
1862-1882
0.004
1
6mer
1494-1514
0.003
2
6mer
1307-1327
0.002
2
6mer
1004-1024
0.002
2
6mer
1412-1432
0.002
1
6mer
1626-1646
0.002
0
6mer
1356-1370
0.002
1
6mer
1258-1272
0.002
2
6mer
1467-1481
0.002
1
6mer
1736-1750
0.002
Not Conserved
6mer
1653-1673
0.002
0
6mer
1202-1222
0.002
2
6mer
1571-1591
0.002
0
6mer
1060-1080
0.002
2
6mer
1118-1132
0.002
2
6mer
1384-1404
0.001
1
6mer
1548-1563
0.001
Not Conserved
6mer
1096-1110
0.001
2
6mer
1032-1052
0.001
2
6mer
1167-1186
0.001
1
6mer
1439-1459
0.001
0
6mer
976-996
0.001
1
AC005772.2
hsa-miR-29a-3p
0.893
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000446671
Biotype: lincRNA
Gene id: ENSG00000232058
Gene Name: AC005772.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
220-245
0.045
1
XLOC_009958
hsa-miR-29a-3p
0.893
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020658
Biotype: transcript isomorph
Gene id: XLOC_009958
Gene Name: XLOC_009958
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1206-1222
0.037
2
7mer
668-681
0.009
0
RP11-1000B6.7
hsa-miR-29a-3p
0.892
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000616244
Biotype: sense_intronic
Gene id: ENSG00000276724
Gene Name: RP11-1000B6.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
204-226
0.045
0
LOC101928767
hsa-miR-29a-3p
0.892
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: NR_110155.1
Biotype: lincRNA
Gene id: NR_110155.1 (gene)
Gene Name: LOC101928767
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
172-188
0.045
0
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