LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-29a-3p


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Gene
miRNA
Score
DIANA Links
XLOC_008141
hsa-miR-29a-3p
0.915
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017307
Biotype: transcript isomorph
Gene id: XLOC_008141
Gene Name: XLOC_008141
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
108-129
0.049
0
RP11-678G14.4
hsa-miR-29a-3p
0.914
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594927
Biotype: lincRNA
Gene id: ENSG00000268240
Gene Name: RP11-678G14.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1615-1629
0.032
0
8mer
1154-1168
0.014
0
6mer
665-678
0.004
0
MLLT4-AS1
hsa-miR-29a-3p
0.914
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000359760
Biotype: lincRNA
Gene id: ENSG00000198221
Gene Name: MLLT4-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2186-2200
0.007
1
7mer
2018-2032
0.006
1
8mer
1796-1816
0.006
0
7mer
2122-2136
0.004
0
7mer
1821-1835
0.003
1
7mer
1993-2016
0.003
Not Conserved
6mer
2057-2083
0.002
0
7mer
1632-1657
0.002
0
7mer
1443-1465
0.002
0
6mer
2077-2092
0.002
1
7mer
1488-1503
0.002
0
6mer
1919-1938
0.001
1
6mer
1954-1968
0.001
1
6mer
1877-1894
0.001
0
6mer
1857-1879
0.001
1
6mer
1757-1771
0.001
0
6mer
1607-1627
0.001
0
6mer
1668-1683
0.001
0
7mer
1463-1478
0.001
0
6mer
1712-1733
0.001
Not Conserved
RP11-649G15.2
hsa-miR-29a-3p
0.913
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518591
Biotype: antisense
Gene id: ENSG00000253582
Gene Name: RP11-649G15.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
311-334
0.049
0
XLOC_004451
hsa-miR-29a-3p
0.913
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009438
Biotype: transcript isomorph
Gene id: XLOC_004451
Gene Name: XLOC_004451
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
416-430
0.049
2
DKFZP434L187
hsa-miR-29a-3p
0.913
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000562624
Biotype: lincRNA
Gene id: ENSG00000225930
Gene Name: DKFZP434L187
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4205-4231
0.029
1
7mer
3664-3673
0.017
1
6mer
3932-3954
0.003
2
RP11-61K9.3
hsa-miR-29a-3p
0.912
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000620617
Biotype: lincRNA
Gene id: ENSG00000275964
Gene Name: RP11-61K9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1014-1031
0.048
4
6mer
298-318
0.001
0
XLOC_003663
hsa-miR-29a-3p
0.911
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008208
Biotype: transcript isomorph
Gene id: XLOC_003663
Gene Name: XLOC_003663
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
162-177
0.049
1
AC004158.3
hsa-miR-29a-3p
0.910
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564508
Biotype: lincRNA
Gene id: ENSG00000260664
Gene Name: AC004158.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4129-4146
0.048
4
LINC00969
hsa-miR-29a-3p
0.909
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000600288
Biotype: lincRNA
Gene id: ENSG00000242086
Gene Name: LINC00969
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
292-319
0.020
2
8mer
292-307
0.015
1
8mer
600-615
0.013
Not Conserved
THUMPD3-AS1
hsa-miR-29a-3p
0.909
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000520447
Biotype: antisense
Gene id: ENSG00000206573
Gene Name: THUMPD3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1436-1457
0.048
0
THUMPD3-AS1
hsa-miR-29a-3p
0.905
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_027007.2
Biotype: lincRNA
Gene id: NR_027007.2 (gene)
Gene Name: THUMPD3-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1466-1487
0.048
0
RP11-582E3.6
hsa-miR-29a-3p
0.905
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000620519
Biotype: lincRNA
Gene id: ENSG00000275764
Gene Name: RP11-582E3.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1619-1643
0.047
1
THUMPD3-AS1
hsa-miR-29a-3p
0.904
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000522525
Biotype: antisense
Gene id: ENSG00000206573
Gene Name: THUMPD3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1470-1491
0.047
0
bP-2189O9.3
hsa-miR-29a-3p
0.904
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000623794
Biotype: lincRNA
Gene id: ENSG00000279579
Gene Name: bP-2189O9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
744-760
0.034
0
6mer
367-385
0.014
0
RP11-273B19.2
hsa-miR-29a-3p
0.904
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000512898
Biotype: lincRNA
Gene id: ENSG00000249727
Gene Name: RP11-273B19.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
114-131
0.047
0
RP11-215H22.1
hsa-miR-29a-3p
0.904
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000561816
Biotype: lincRNA
Gene id: ENSG00000261340
Gene Name: RP11-215H22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
861-874
0.047
1
MIR6818
hsa-miR-29a-3p
0.903
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624945
Biotype: antisense
Gene id: ENSG00000279159
Gene Name: MIR6818
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
25958-25976
0.009
2
7mer
27253-27276
0.007
1
7mer
43737-43750
0.005
11
7mer
41546-41570
0.004
2
6mer
7624-7638
0.002
4
6mer
40639-40653
0.002
6
6mer
42446-42470
0.002
3
6mer
5598-5612
0.002
2
6mer
1479-1492
0.001
1
6mer
47639-47658
0.001
4
6mer
14145-14168
0.001
1
6mer
40276-40294
0.001
Not Conserved
6mer
18473-18499
0.001
1
6mer
3655-3673
0.001
Not Conserved
6mer
37167-37190
0.001
1
6mer
11032-11052
0.001
Not Conserved
6mer
45096-45113
0.001
0
6mer
38121-38140
0.001
1
6mer
42971-42998
0.001
2
6mer
43285-43303
0.001
1
6mer
37089-37110
0.001
2
RP11-24M17.4
hsa-miR-29a-3p
0.903
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000569596
Biotype: lincRNA
Gene id: ENSG00000260288
Gene Name: RP11-24M17.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
158-174
0.047
0
XLOC_006442
hsa-miR-29a-3p
0.903
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013801
Biotype: transcript isomorph
Gene id: XLOC_006442
Gene Name: XLOC_006442
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
263-281
0.047
0
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