LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-29a-3p


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Gene
miRNA
Score
DIANA Links
LOC100128288
hsa-miR-29a-3p
0.973
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: NR_024447.1
Biotype: lincRNA
Gene id: NR_024447.1 (gene)
Gene Name: LOC100128288
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2089-2109
0.069
1
RP11-493L12.4
hsa-miR-29a-3p
0.970
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000547777
Biotype: lincRNA
Gene id: ENSG00000258181
Gene Name: RP11-493L12.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
179-197
0.068
1
XLOC_013778
hsa-miR-29a-3p
0.970
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028426
Biotype: transcript isomorph
Gene id: XLOC_013778
Gene Name: XLOC_013778
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
4031-4057
0.007
0
8mer
967-988
0.005
1
7mer
437-456
0.005
0
8mer
2625-2645
0.004
Not Conserved
8mer
1218-1239
0.004
1
7mer
285-311
0.004
0
7mer
3246-3267
0.004
0
9mer
4430-4456
0.003
Not Conserved
7mer
1466-1485
0.003
1
6mer
336-357
0.003
1
7mer
4694-4720
0.003
Not Conserved
7mer
1073-1099
0.003
1
7mer
2153-2174
0.002
Not Conserved
7mer
4483-4509
0.002
0
7mer
1020-1041
0.001
0
7mer
1271-1292
0.001
1
6mer
650-668
0.001
0
7mer
2787-2813
0.001
Not Conserved
6mer
3661-3682
0.001
0
6mer
862-888
0.001
0
7mer
1890-1916
0.001
Not Conserved
6mer
809-827
0.001
0
6mer
597-615
0.001
Not Conserved
7mer
2573-2599
0.001
Not Conserved
7mer
3872-3896
0.001
0
7mer
1320-1336
0.001
Not Conserved
6mer
4190-4216
0.001
Not Conserved
7mer
2100-2121
0.001
Not Conserved
7mer
4137-4158
0.001
Not Conserved
7mer
2049-2070
0.001
Not Conserved
6mer
3894-3913
0.001
0
7mer
1996-2016
0.001
Not Conserved
6mer
4641-4662
0.000
0
6mer
1371-1392
0.000
1
6mer
1418-1439
0.000
0
LOC102659288
hsa-miR-29a-3p
0.969
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_110015.1
Biotype: lincRNA
Gene id: NR_110015.1 (gene)
Gene Name: LOC102659288
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
35-52
0.067
0
LOC102659288
hsa-miR-29a-3p
0.969
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_110014.1
Biotype: lincRNA
Gene id: NR_110014.1 (gene)
Gene Name: LOC102659288
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
35-52
0.067
0
RP11-14K3.7
hsa-miR-29a-3p
0.968
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000566449
Biotype: lincRNA
Gene id: ENSG00000259791
Gene Name: RP11-14K3.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
136-143
0.066
0
THUMPD3-AS1
hsa-miR-29a-3p
0.967
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000521609
Biotype: antisense
Gene id: ENSG00000206573
Gene Name: THUMPD3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
209-230
0.066
0
THUMPD3-AS1
hsa-miR-29a-3p
0.966
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000520396
Biotype: antisense
Gene id: ENSG00000206573
Gene Name: THUMPD3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
325-346
0.066
0
NEAT1
hsa-miR-29a-3p
0.964
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000501122
Biotype: lincRNA
Gene id: ENSG00000245532
Gene Name: NEAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
8513-8530
0.021
1
9mer
16034-16047
0.019
1
8mer
5047-5066
0.009
0
7mer
21823-21847
0.005
3
8mer
7052-7073
0.004
0
7mer
16349-16363
0.003
1
6mer
22097-22109
0.002
1
6mer
4480-4496
0.001
1
XLOC_012257
hsa-miR-29a-3p
0.964
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025439
Biotype: transcript isomorph
Gene id: XLOC_012257
Gene Name: XLOC_012257
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
346-360
0.064
0
THUMPD3-AS1
hsa-miR-29a-3p
0.964
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000523354
Biotype: antisense
Gene id: ENSG00000206573
Gene Name: THUMPD3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
158-179
0.064
0
AC019117.1
hsa-miR-29a-3p
0.964
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000419463
Biotype: lincRNA
Gene id: ENSG00000236318
Gene Name: AC019117.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
85-102
0.064
0
XLOC_006118
hsa-miR-29a-3p
0.963
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013467
Biotype: transcript isomorph
Gene id: XLOC_006118
Gene Name: XLOC_006118
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2380-2404
0.064
1
RP11-326K13.4
hsa-miR-29a-3p
0.963
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000580420
Biotype: antisense
Gene id: ENSG00000263823
Gene Name: RP11-326K13.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1545-1558
0.062
1
6mer
838-855
0.002
1
THUMPD3-AS1
hsa-miR-29a-3p
0.962
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000520629
Biotype: antisense
Gene id: ENSG00000206573
Gene Name: THUMPD3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
172-193
0.063
0
XLOC_007942
hsa-miR-29a-3p
0.960
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00016971
Biotype: transcript isomorph
Gene id: XLOC_007942
Gene Name: XLOC_007942
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
76-99
0.057
2
6mer
419-440
0.006
3
AC005154.6
hsa-miR-29a-3p
0.959
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000580440
Biotype: antisense
Gene id: ENSG00000196295
Gene Name: AC005154.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
245-264
0.029
1
8mer
259-279
0.024
0
7mer
299-318
0.009
1
PWRN2
hsa-miR-29a-3p
0.959
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: NR_026647.1
Biotype: lincRNA
Gene id: NR_026647.1 (gene)
Gene Name: PWRN2
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4741-4756
0.033
0
8mer
4490-4507
0.022
0
6mer
1150-1164
0.005
1
6mer
2035-2049
0.002
0
XLOC_011881
hsa-miR-29a-3p
0.958
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024263
Biotype: transcript isomorph
Gene id: XLOC_011881
Gene Name: XLOC_011881
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
372-398
0.062
1
XLOC_013779
hsa-miR-29a-3p
0.958
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028429
Biotype: transcript isomorph
Gene id: XLOC_013779
Gene Name: XLOC_013779
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3051-3072
0.026
1
7mer
2998-3019
0.008
1
7mer
2889-2907
0.007
1
6mer
3104-3131
0.005
1
7mer
1113-1133
0.004
0
8mer
283-304
0.003
Not Conserved
6mer
389-411
0.003
0
6mer
604-621
0.002
Not Conserved
7mer
1272-1298
0.001
Not Conserved
6mer
498-519
0.001
Not Conserved
6mer
796-823
0.001
Not Conserved
6mer
445-466
0.001
Not Conserved
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