LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-29a-3p


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Gene
miRNA
Score
DIANA Links
TTTY15
hsa-miR-29a-3p
0.991
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: NR_001545.2
Biotype: lincRNA
Gene id: NR_001545.2 (gene)
Gene Name: TTTY15
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4335-4351
0.043
0
7mer
158-175
0.027
0
7mer
3937-3955
0.017
0
XLOC_008295
hsa-miR-29a-3p
0.990
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017578
Biotype: transcript isomorph
Gene id: XLOC_008295
Gene Name: XLOC_008295
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4368-4384
0.043
0
7mer
191-208
0.027
0
7mer
3970-3988
0.017
0
TTTY15
hsa-miR-29a-3p
0.990
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000440408
Biotype: lincRNA
Gene id: ENSG00000233864
Gene Name: TTTY15
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4368-4384
0.043
0
7mer
191-208
0.027
0
7mer
3970-3988
0.016
0
LINC00881
hsa-miR-29a-3p
0.990
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000467995
Biotype: lincRNA
Gene id: ENSG00000241135
Gene Name: LINC00881
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Heart Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
444-466
0.077
6
6mer
65-86
0.005
3
6mer
250-275
0.004
2
XLOC_006128
hsa-miR-29a-3p
0.987
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013480
Biotype: transcript isomorph
Gene id: XLOC_006128
Gene Name: XLOC_006128
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
225-246
0.081
1
XLOC_007440
hsa-miR-29a-3p
0.986
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016048
Biotype: transcript isomorph
Gene id: XLOC_007440
Gene Name: XLOC_007440
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
Fibroblasts Lung Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
691-704
0.081
1
LINC00706
hsa-miR-29a-3p
0.985
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_108074.1
Biotype: lincRNA
Gene id: NR_108074.1 (gene)
Gene Name: LINC00706
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
662-677
0.079
1
MIR490
hsa-miR-29a-3p
0.984
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000439694
Biotype: antisense
Gene id: ENSG00000234352
Gene Name: MIR490
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
575-596
0.062
3
8mer
832-856
0.016
1
XLOC_013543
hsa-miR-29a-3p
0.984
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028193
Biotype: transcript isomorph
Gene id: XLOC_013543
Gene Name: XLOC_013543
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
239-260
0.017
0
8mer
3665-3686
0.008
0
7mer
3868-3894
0.008
1
7mer
3929-3947
0.006
1
8mer
3451-3472
0.006
0
7mer
292-313
0.004
0
6mer
129-155
0.004
1
6mer
180-207
0.004
1
7mer
3184-3205
0.004
Not Conserved
6mer
3725-3742
0.003
0
6mer
3768-3789
0.003
0
7mer
3075-3095
0.002
Not Conserved
7mer
2440-2452
0.002
Not Conserved
6mer
3502-3528
0.002
0
7mer
1964-1989
0.001
Not Conserved
7mer
1717-1733
0.001
Not Conserved
6mer
2778-2799
0.001
0
8mer
2183-2204
0.001
Not Conserved
6mer
3290-3314
0.001
Not Conserved
7mer
2830-2851
0.001
Not Conserved
7mer
2131-2152
0.001
Not Conserved
7mer
2024-2045
0.001
Not Conserved
7mer
2002-2020
0.001
Not Conserved
CTB-114C7.4
hsa-miR-29a-3p
0.984
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000511921
Biotype: lincRNA
Gene id: ENSG00000250274
Gene Name: CTB-114C7.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Placenta Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2014-2034
0.073
1
6mer
1067-1080
0.003
2
6mer
1515-1536
0.002
0
RP13-228J13.1
hsa-miR-29a-3p
0.983
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000412436
Biotype: antisense
Gene id: ENSG00000224216
Gene Name: RP13-228J13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
189-209
0.077
1
AC138035.2
hsa-miR-29a-3p
0.983
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000604669
Biotype: lincRNA
Gene id: ENSG00000238035
Gene Name: AC138035.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
38-53
0.049
1
6mer
623-641
0.015
1
6mer
539-558
0.013
1
MIR4697HG
hsa-miR-29a-3p
0.982
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_024344.1
Biotype: lincRNA
Gene id: NR_024344.1 (gene)
Gene Name: MIR4697HG
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3950-3975
0.032
9
8mer
1644-1669
0.010
10
6mer
709-716
0.010
9
7mer
2703-2717
0.008
7
6mer
1215-1231
0.007
10
6mer
1655-1669
0.006
11
6mer
4903-4930
0.002
1
7mer
3897-3921
0.001
0
TMLHE-AS1
hsa-miR-29a-3p
0.979
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000433624
Biotype: antisense
Gene id: ENSG00000224533
Gene Name: TMLHE-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1494-1514
0.074
1
RP11-797H7.5
hsa-miR-29a-3p
0.977
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000340779
Biotype: antisense
Gene id: ENSG00000189316
Gene Name: RP11-797H7.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
55-76
0.042
1
8mer
695-713
0.019
0
6mer
48-69
0.010
1
KCNQ1OT1
hsa-miR-29a-3p
0.975
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000597346
Biotype: antisense
Gene id: ENSG00000269821
Gene Name: KCNQ1OT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
27090-27109
0.008
0
8mer
6287-6308
0.005
1
7mer
84972-84997
0.004
1
7mer
55048-55072
0.004
1
7mer
36490-36512
0.004
0
7mer
81527-81551
0.003
0
7mer
63650-63669
0.003
1
7mer
83672-83696
0.003
1
6mer
20070-20095
0.002
1
7mer
47317-47341
0.002
2
6mer
5256-5269
0.002
1
6mer
40521-40539
0.002
1
6mer
72796-72812
0.002
1
6mer
50177-50199
0.002
2
6mer
79682-79697
0.002
3
7mer
65498-65523
0.002
1
6mer
67292-67310
0.002
1
6mer
58007-58025
0.002
2
6mer
14977-14992
0.002
Not Conserved
6mer
7119-7142
0.002
1
6mer
60704-60726
0.001
2
6mer
1501-1514
0.001
1
6mer
82178-82204
0.001
0
6mer
71549-71559
0.001
0
6mer
40100-40114
0.001
Not Conserved
6mer
78272-78295
0.001
1
8mer+mismatch
77712-77727
0.001
0
6mer
26507-26526
0.001
0
6mer
59601-59621
0.001
1
7mer
76090-76115
0.001
Not Conserved
6mer
57030-57048
0.001
0
7mer
63557-63582
0.001
1
6mer
57893-57915
0.001
2
LINC00680
hsa-miR-29a-3p
0.974
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000422882
Biotype: lincRNA
Gene id: ENSG00000215190
Gene Name: LINC00680
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1393-1410
0.055
0
7mer
1214-1239
0.015
0
THUMPD3-AS1
hsa-miR-29a-3p
0.974
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000494680
Biotype: antisense
Gene id: ENSG00000206573
Gene Name: THUMPD3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
127-148
0.070
0
RP11-53B2.4
hsa-miR-29a-3p
0.974
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000590042
Biotype: antisense
Gene id: ENSG00000267503
Gene Name: RP11-53B2.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
33-39
0.070
3
LINC00265
hsa-miR-29a-3p
0.973
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000448955
Biotype: lincRNA
Gene id: ENSG00000188185
Gene Name: LINC00265
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
73-88
0.050
1
6mer
417-436
0.013
1
6mer
303-319
0.006
0
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