LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-299-5p


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Gene
miRNA
Score
DIANA Links
AC007285.6
hsa-miR-299-5p
0.842
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000419103
Biotype: antisense
Gene id: ENSG00000227014
Gene Name: AC007285.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
587-597
0.038
1
RP11-307P5.2
hsa-miR-299-5p
0.842
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000448909
Biotype: lincRNA
Gene id: ENSG00000226249
Gene Name: RP11-307P5.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
468-494
0.026
5
6mer
133-137
0.007
3
6mer
439-452
0.005
1
RP11-88L24.4
hsa-miR-299-5p
0.840
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000582038
Biotype: antisense
Gene id: ENSG00000266413
Gene Name: RP11-88L24.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1391-1412
0.030
0
6mer
1608-1634
0.004
1
6mer
783-790
0.004
7
RP11-94I2.4
hsa-miR-299-5p
0.839
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000614663
Biotype: lincRNA
Gene id: ENSG00000274372
Gene Name: RP11-94I2.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
477-491
0.021
0
6mer
395-418
0.017
1
RP11-122A21.2
hsa-miR-299-5p
0.839
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000504175
Biotype: antisense
Gene id: ENSG00000250267
Gene Name: RP11-122A21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1436-1455
0.014
2
7mer
1397-1407
0.013
2
6mer
1295-1311
0.006
1
6mer
594-613
0.004
1
RP4-717I23.3
hsa-miR-299-5p
0.837
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000452347
Biotype: lincRNA
Gene id: ENSG00000223745
Gene Name: RP4-717I23.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
484-507
0.037
2
CTD-2260A17.2
hsa-miR-299-5p
0.836
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000504967
Biotype: antisense
Gene id: ENSG00000247121
Gene Name: CTD-2260A17.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
238-255
0.037
1
GS1-120K12.4
hsa-miR-299-5p
0.836
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000566476
Biotype: lincRNA
Gene id: ENSG00000260976
Gene Name: GS1-120K12.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
975-980
0.020
2
7mer
526-536
0.010
1
6mer
141-156
0.007
3
RP11-76E12.1
hsa-miR-299-5p
0.836
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000355909
Biotype: lincRNA
Gene id: ENSG00000197176
Gene Name: RP11-76E12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
16-35
0.033
5
6mer
1129-1152
0.004
1
RP11-94I2.4
hsa-miR-299-5p
0.835
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000617309
Biotype: lincRNA
Gene id: ENSG00000274372
Gene Name: RP11-94I2.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
422-436
0.020
0
6mer
340-363
0.017
1
RP1-27K12.2
hsa-miR-299-5p
0.835
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000504928
Biotype: lincRNA
Gene id: ENSG00000231683
Gene Name: RP1-27K12.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
128-136
0.037
1
CTC-260E6.6
hsa-miR-299-5p
0.835
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000592022
Biotype: antisense
Gene id: ENSG00000267383
Gene Name: CTC-260E6.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
9-33
0.030
0
6mer
937-951
0.007
0
RP11-386J22.3
hsa-miR-299-5p
0.835
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000622201
Biotype: sense_intronic
Gene id: ENSG00000274421
Gene Name: RP11-386J22.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
713-740
0.037
1
RP11-421E14.2
hsa-miR-299-5p
0.835
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000581917
Biotype: sense_intronic
Gene id: ENSG00000264895
Gene Name: RP11-421E14.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2077-2091
0.028
3
6mer
121-135
0.006
1
6mer
1500-1504
0.003
0
XIST
hsa-miR-299-5p
0.833
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000429829
Biotype: lincRNA
Gene id: ENSG00000229807
Gene Name: XIST
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2317-2336
0.009
0
7mer
3520-3539
0.005
2
6mer
5980-5995
0.004
5
7mer
3930-3943
0.004
1
6mer
807-823
0.003
0
6mer
16025-16033
0.002
3
6mer
18222-18246
0.002
0
6mer
6344-6354
0.002
2
6mer
14342-14366
0.002
1
6mer
5151-5155
0.002
1
8mer+mismatch
17465-17492
0.001
1
6mer
3894-3919
0.001
1
RP11-60A8.2
hsa-miR-299-5p
0.832
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000511174
Biotype: lincRNA
Gene id: ENSG00000251543
Gene Name: RP11-60A8.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
214-229
0.037
9
RP1-273G13.3
hsa-miR-299-5p
0.831
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518163
Biotype: lincRNA
Gene id: ENSG00000254194
Gene Name: RP1-273G13.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
94-111
0.021
0
7mer
55-73
0.016
0
RP3-399L15.3
hsa-miR-299-5p
0.831
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000517965
Biotype: antisense
Gene id: ENSG00000228624
Gene Name: RP3-399L15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
681-687
0.037
1
XLOC_010972
hsa-miR-299-5p
0.830
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022677
Biotype: transcript isomorph
Gene id: XLOC_010972
Gene Name: XLOC_010972
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
825-843
0.019
1
6mer
50-75
0.018
1
XLOC_010545
hsa-miR-299-5p
0.830
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021948
Biotype: transcript isomorph
Gene id: XLOC_010545
Gene Name: XLOC_010545
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
85-90
0.027
2
7mer
386-396
0.010
0
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