LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-299-5p


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Gene
miRNA
Score
DIANA Links
CTC-459F4.3
hsa-miR-299-5p
0.857
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588784
Biotype: lincRNA
Gene id: ENSG00000267575
Gene Name: CTC-459F4.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2033-2057
0.026
0
6mer
2361-2375
0.014
0
TTTY15
hsa-miR-299-5p
0.857
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000417071
Biotype: lincRNA
Gene id: ENSG00000233864
Gene Name: TTTY15
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
350-374
0.040
0
XLOC_003201
hsa-miR-299-5p
0.857
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006579
Biotype: transcript isomorph
Gene id: XLOC_003201
Gene Name: XLOC_003201
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
98-110
0.040
1
RP11-114I8.4
hsa-miR-299-5p
0.856
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000608041
Biotype: lincRNA
Gene id: ENSG00000273488
Gene Name: RP11-114I8.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
421-427
0.032
0
6mer
62-83
0.008
1
XLOC_000508
hsa-miR-299-5p
0.855
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001231
Biotype: transcript isomorph
Gene id: XLOC_000508
Gene Name: XLOC_000508
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
98-109
0.034
1
6mer
916-926
0.006
3
TARID
hsa-miR-299-5p
0.854
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000607641
Biotype: antisense
Gene id: ENSG00000227954
Gene Name: TARID
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
99-117
0.040
9
FAM223A
hsa-miR-299-5p
0.853
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000593346
Biotype: lincRNA
Gene id: ENSG00000272681
Gene Name: FAM223A
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
17-36
0.017
1
6mer
310-318
0.016
1
6mer
67-71
0.007
0
RP11-345M22.2
hsa-miR-299-5p
0.853
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562921
Biotype: lincRNA
Gene id: ENSG00000261390
Gene Name: RP11-345M22.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HREpiC Kidney Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
311-320
0.025
6
6mer
274-292
0.009
8
6mer
1617-1621
0.005
3
RP11-464F9.21
hsa-miR-299-5p
0.853
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000606726
Biotype: antisense
Gene id: ENSG00000271848
Gene Name: RP11-464F9.21
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
355-372
0.039
1
MEG3
hsa-miR-299-5p
0.853
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000424076
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
331-340
0.015
3
7mer
2493-2519
0.012
1
6mer
2351-2374
0.006
1
6mer
1415-1423
0.003
4
6mer
2120-2124
0.003
Not Conserved
RP11-293N14.1
hsa-miR-299-5p
0.852
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000563923
Biotype: lincRNA
Gene id: ENSG00000260223
Gene Name: RP11-293N14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
35-62
0.030
5
6mer
338-357
0.005
1
6mer
126-136
0.004
1
LINC00893
hsa-miR-299-5p
0.851
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000430173
Biotype: antisense
Gene id: ENSG00000241769
Gene Name: LINC00893
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
261-285
0.039
1
MIR6818
hsa-miR-299-5p
0.850
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624945
Biotype: antisense
Gene id: ENSG00000279159
Gene Name: MIR6818
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
48945-48965
0.006
3
7mer
37966-37993
0.004
1
6mer
19831-19841
0.004
10
6mer
27315-27319
0.002
2
7mer
6972-6977
0.002
0
6mer
4134-4138
0.002
1
6mer
16924-16928
0.002
1
6mer
11453-11466
0.002
6
6mer
32173-32199
0.002
3
6mer
7066-7088
0.002
4
6mer
42439-42450
0.002
4
6mer
30619-30633
0.002
Not Conserved
6mer
34124-34144
0.002
0
6mer
18454-18477
0.001
1
6mer
5140-5165
0.001
0
6mer
23358-23372
0.001
0
6mer
39406-39422
0.001
1
6mer
37961-37985
0.001
7
LINC00704
hsa-miR-299-5p
0.847
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_024475.1
Biotype: lincRNA
Gene id: NR_024475.1 (gene)
Gene Name: LINC00704
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
119-136
0.034
2
6mer
7-31
0.004
1
RP11-686O6.1
hsa-miR-299-5p
0.847
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000609491
Biotype: lincRNA
Gene id: ENSG00000272966
Gene Name: RP11-686O6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
157-176
0.033
2
6mer
284-301
0.006
1
XLOC_006179
hsa-miR-299-5p
0.845
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013540
Biotype: transcript isomorph
Gene id: XLOC_006179
Gene Name: XLOC_006179
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1241-1257
0.026
4
6mer
183-192
0.005
1
6mer
272-289
0.005
0
6mer
93-115
0.003
0
RP11-705C15.4
hsa-miR-299-5p
0.845
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000546259
Biotype: antisense
Gene id: ENSG00000256442
Gene Name: RP11-705C15.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
184-207
0.020
1
6mer
448-466
0.018
1
RP1-232P20.1
hsa-miR-299-5p
0.845
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000602674
Biotype: antisense
Gene id: ENSG00000269985
Gene Name: RP1-232P20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
34-51
0.022
3
7mer
1219-1244
0.014
1
6mer
853-868
0.003
0
LINC00704
hsa-miR-299-5p
0.845
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000430998
Biotype: lincRNA
Gene id: ENSG00000231298
Gene Name: LINC00704
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
119-136
0.034
2
6mer
7-31
0.004
1
RP11-78A19.3
hsa-miR-299-5p
0.843
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000586474
Biotype: antisense
Gene id: ENSG00000267165
Gene Name: RP11-78A19.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
41-60
0.026
5
6mer
248-252
0.006
1
6mer
408-412
0.006
1
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