LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-299-5p


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Gene
miRNA
Score
DIANA Links
LOC284933
hsa-miR-299-5p
0.872
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: NR_038917.1
Biotype: antisense
Gene id: NR_038917.1 (gene)
Gene Name: LOC284933
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
401-417
0.037
7
6mer
273-295
0.005
0
LINC00703
hsa-miR-299-5p
0.872
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000454152
Biotype: lincRNA
Gene id: ENSG00000224382
Gene Name: LINC00703
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
76-94
0.028
5
7mer
2341-2362
0.014
1
RP11-752D24.3
hsa-miR-299-5p
0.871
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000514957
Biotype: lincRNA
Gene id: ENSG00000250302
Gene Name: RP11-752D24.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
637-648
0.027
3
7mer
214-229
0.015
1
RP11-609N14.1
hsa-miR-299-5p
0.870
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569215
Biotype: lincRNA
Gene id: ENSG00000260756
Gene Name: RP11-609N14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1262-1279
0.038
0
6mer
835-855
0.004
0
XLOC_002035
hsa-miR-299-5p
0.870
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003242
Biotype: transcript isomorph
Gene id: XLOC_002035
Gene Name: XLOC_002035
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1175-1186
0.025
2
7mer
150-160
0.017
1
RP4-717I23.3
hsa-miR-299-5p
0.870
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000421202
Biotype: lincRNA
Gene id: ENSG00000223745
Gene Name: RP4-717I23.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2525-2548
0.038
2
6mer
209-223
0.004
1
XLOC_008274
hsa-miR-299-5p
0.870
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017605
Biotype: transcript isomorph
Gene id: XLOC_008274
Gene Name: XLOC_008274
UCSC graphic: -
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
287-291
0.011
2
6mer
358-362
0.009
2
6mer
5686-5703
0.008
1
6mer
2819-2823
0.004
2
8mer+wobble
2151-2176
0.004
1
6mer
982-997
0.004
1
6mer
1530-1534
0.003
1
RP11-386G11.5
hsa-miR-299-5p
0.869
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000547866
Biotype: antisense
Gene id: ENSG00000257913
Gene Name: RP11-386G11.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
518-531
0.038
1
6mer
803-821
0.004
3
RP11-128B16.3
hsa-miR-299-5p
0.868
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000455612
Biotype: lincRNA
Gene id: ENSG00000236894
Gene Name: RP11-128B16.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
338-354
0.042
0
XLOC_003228
hsa-miR-299-5p
0.868
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00007245
Biotype: transcript isomorph
Gene id: XLOC_003228
Gene Name: XLOC_003228
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2403-2427
0.022
1
6mer
23-27
0.009
2
7mer
1550-1555
0.006
1
6mer
3012-3033
0.003
2
6mer
661-683
0.002
Not Conserved
XLOC_003775
hsa-miR-299-5p
0.867
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008319
Biotype: transcript isomorph
Gene id: XLOC_003775
Gene Name: XLOC_003775
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2070-2096
0.041
1
SEPT7-AS1
hsa-miR-299-5p
0.866
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000437235
Biotype: lincRNA
Gene id: ENSG00000228878
Gene Name: SEPT7-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3224-3234
0.035
1
6mer
772-786
0.003
3
6mer
601-627
0.003
1
CTB-176F20.3
hsa-miR-299-5p
0.864
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600671
Biotype: antisense
Gene id: ENSG00000267934
Gene Name: CTB-176F20.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5072-5095
0.026
0
7mer
3867-3884
0.009
0
6mer
2008-2012
0.003
0
6mer
1738-1742
0.003
0
XLOC_012786
hsa-miR-299-5p
0.863
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026443
Biotype: transcript isomorph
Gene id: XLOC_012786
Gene Name: XLOC_012786
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
181-196
0.041
7
RP11-179B2.2
hsa-miR-299-5p
0.862
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000608554
Biotype: antisense
Gene id: ENSG00000272572
Gene Name: RP11-179B2.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
950-965
0.037
2
6mer
1034-1060
0.004
1
CTA-544A11.1
hsa-miR-299-5p
0.859
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624411
Biotype: antisense
Gene id: ENSG00000279802
Gene Name: CTA-544A11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2036-2061
0.007
0
6mer
12085-12100
0.006
3
6mer
11034-11038
0.006
5
6mer
2366-2376
0.004
8
6mer
3370-3379
0.003
2
6mer
782-786
0.003
1
6mer
8831-8835
0.002
0
6mer
4561-4565
0.002
1
6mer
1137-1146
0.002
2
6mer
9807-9811
0.002
1
6mer
7153-7172
0.002
1
6mer
7571-7591
0.002
1
CTA-342B11.3
hsa-miR-299-5p
0.859
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624235
Biotype: lincRNA
Gene id: ENSG00000280370
Gene Name: CTA-342B11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
10122-10128
0.018
1
7mer
13553-13563
0.006
2
6mer
24597-24601
0.004
0
6mer
7786-7790
0.002
1
6mer
17220-17224
0.002
0
6mer
1773-1785
0.002
0
6mer
9634-9650
0.002
0
6mer
12567-12578
0.002
1
6mer
9080-9106
0.001
0
6mer
19460-19472
0.001
0
6mer
1811-1815
0.001
1
6mer
17232-17236
0.001
0
XLOC_002857
hsa-miR-299-5p
0.858
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006255
Biotype: transcript isomorph
Gene id: XLOC_002857
Gene Name: XLOC_002857
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
137-148
0.040
3
AE000661.37
hsa-miR-299-5p
0.858
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000514473
Biotype: antisense
Gene id: ENSG00000251002
Gene Name: AE000661.37
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1775-1784
0.026
4
7mer
1614-1619
0.010
1
6mer
1645-1667
0.005
3
XLOC_009811
hsa-miR-299-5p
0.858
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020480
Biotype: transcript isomorph
Gene id: XLOC_009811
Gene Name: XLOC_009811
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
79-91
0.040
1
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