LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-299-5p


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Gene
miRNA
Score
DIANA Links
RP11-96O20.5
hsa-miR-299-5p
0.946
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000619041
Biotype: lincRNA
Gene id: ENSG00000275709
Gene Name: RP11-96O20.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
23-29
0.048
1
6mer
5-9
0.009
1
AC023669.1
hsa-miR-299-5p
0.945
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000414915
Biotype: lincRNA
Gene id: ENSG00000229459
Gene Name: AC023669.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
85-106
0.057
0
AC109333.10
hsa-miR-299-5p
0.944
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000438266
Biotype: antisense
Gene id: ENSG00000227495
Gene Name: AC109333.10
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
18-45
0.057
1
HMMR-AS1
hsa-miR-299-5p
0.942
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000521666
Biotype: antisense
Gene id: ENSG00000251018
Gene Name: HMMR-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
703-725
0.056
1
XLOC_005319
hsa-miR-299-5p
0.942
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011831
Biotype: transcript isomorph
Gene id: XLOC_005319
Gene Name: XLOC_005319
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
208-218
0.056
1
XLOC_002712
hsa-miR-299-5p
0.941
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006100
Biotype: transcript isomorph
Gene id: XLOC_002712
Gene Name: XLOC_002712
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
464-469
0.056
0
HMMR-AS1
hsa-miR-299-5p
0.939
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000514724
Biotype: antisense
Gene id: ENSG00000251018
Gene Name: HMMR-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
576-598
0.055
1
RP11-205K6.1
hsa-miR-299-5p
0.937
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000454034
Biotype: lincRNA
Gene id: ENSG00000233721
Gene Name: RP11-205K6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
444-464
0.040
8
6mer
333-340
0.008
6
6mer
679-683
0.007
1
RP11-166P13.4
hsa-miR-299-5p
0.937
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000576014
Biotype: antisense
Gene id: ENSG00000263089
Gene Name: RP11-166P13.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
210-215
0.041
8
7mer
4023-4028
0.010
0
6mer
3547-3557
0.003
1
6mer
2238-2252
0.001
1
RP11-48B3.4
hsa-miR-299-5p
0.935
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000569134
Biotype: lincRNA
Gene id: ENSG00000260317
Gene Name: RP11-48B3.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
146-166
0.047
2
6mer
1446-1468
0.007
3
LINC01435
hsa-miR-299-5p
0.935
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000595603
Biotype: lincRNA
Gene id: ENSG00000229981
Gene Name: LINC01435
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
650-663
0.037
1
7mer
629-634
0.008
1
6mer
642-646
0.005
2
6mer
157-176
0.004
1
RP11-686D22.8
hsa-miR-299-5p
0.934
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000587012
Biotype: processed_transcript
Gene id: ENSG00000267745
Gene Name: RP11-686D22.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
119-129
0.043
1
7mer
323-341
0.011
0
ATP6V0E2-AS1
hsa-miR-299-5p
0.933
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000461019
Biotype: antisense
Gene id: ENSG00000204934
Gene Name: ATP6V0E2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
15-26
0.051
1
6mer
2178-2197
0.002
2
RP11-3M1.1
hsa-miR-299-5p
0.930
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000563906
Biotype: sense_overlapping
Gene id: ENSG00000261538
Gene Name: RP11-3M1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
289-295
0.053
2
RP11-480I12.7
hsa-miR-299-5p
0.925
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000456105
Biotype: lincRNA
Gene id: ENSG00000234996
Gene Name: RP11-480I12.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2277-2291
0.042
1
7mer
1503-1508
0.005
0
6mer
82-97
0.005
1
PSMD5-AS1
hsa-miR-299-5p
0.925
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000442982
Biotype: antisense
Gene id: ENSG00000226752
Gene Name: PSMD5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1594-1612
0.030
3
7mer
1930-1943
0.018
1
6mer
126-151
0.003
1
RP11-800A3.7
hsa-miR-299-5p
0.925
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000546324
Biotype: antisense
Gene id: ENSG00000257038
Gene Name: RP11-800A3.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1609-1627
0.052
7
RP11-757G1.6
hsa-miR-299-5p
0.924
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000512200
Biotype: lincRNA
Gene id: ENSG00000250508
Gene Name: RP11-757G1.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1744-1762
0.018
0
6mer
729-752
0.011
0
7mer
1349-1354
0.010
0
6mer
1271-1296
0.006
0
6mer
2176-2195
0.006
0
RP11-530C5.4
hsa-miR-299-5p
0.923
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000619055
Biotype: sense_intronic
Gene id: ENSG00000277130
Gene Name: RP11-530C5.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
103-117
0.051
1
LL22NC03-22D1.1
hsa-miR-299-5p
0.921
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624601
Biotype: lincRNA
Gene id: ENSG00000279003
Gene Name: LL22NC03-22D1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
28594-28599
0.012
1
7mer
19243-19266
0.006
3
7mer
12846-12851
0.005
1
7mer
2160-2184
0.005
0
6mer
1440-1444
0.004
7
6mer
678-693
0.004
1
7mer
24982-25001
0.003
1
6mer
18016-18020
0.003
6
6mer
18600-18612
0.002
2
6mer
22993-22997
0.002
1
6mer
19552-19574
0.001
0
6mer
7478-7505
0.001
0
6mer
27049-27059
0.001
Not Conserved
6mer
7828-7853
0.001
1
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