LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-299-5p


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Gene
miRNA
Score
DIANA Links
XLOC_008295
hsa-miR-299-5p
0.977
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017578
Biotype: transcript isomorph
Gene id: XLOC_008295
Gene Name: XLOC_008295
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
774-798
0.032
0
6mer
566-577
0.017
0
6mer
4933-4951
0.010
0
6mer
4329-4333
0.008
0
6mer
1788-1801
0.005
0
TTTY15
hsa-miR-299-5p
0.977
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000440408
Biotype: lincRNA
Gene id: ENSG00000233864
Gene Name: TTTY15
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
774-798
0.032
0
6mer
566-577
0.016
0
6mer
4933-4951
0.010
0
6mer
4329-4333
0.008
0
6mer
1788-1801
0.005
0
TSIX
hsa-miR-299-5p
0.975
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000604411
Biotype: lincRNA
Gene id: ENSG00000270641
Gene Name: TSIX
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
17535-17546
0.018
1
9mer
4922-4936
0.008
1
7mer
30128-30141
0.005
2
7mer
4855-4876
0.004
1
7mer
12283-12305
0.004
Not Conserved
7mer
5602-5624
0.004
1
6mer
32330-32340
0.003
2
6mer
33746-33757
0.002
5
6mer
32145-32149
0.002
2
6mer
34853-34871
0.002
2
6mer
31225-31229
0.002
Not Conserved
6mer
29869-29888
0.002
3
6mer
1531-1535
0.002
1
6mer
27986-28008
0.002
0
6mer
20262-20283
0.002
0
6mer
26264-26283
0.002
Not Conserved
6mer
8696-8723
0.002
0
6mer
29367-29390
0.001
0
6mer
33455-33469
0.001
0
6mer
27361-27380
0.001
Not Conserved
6mer
20304-20321
0.001
3
6mer
3559-3577
0.001
0
RP11-341N2.1
hsa-miR-299-5p
0.975
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000567549
Biotype: antisense
Gene id: ENSG00000261186
Gene Name: RP11-341N2.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6-29
0.070
1
TTTY15
hsa-miR-299-5p
0.973
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: NR_001545.2
Biotype: lincRNA
Gene id: NR_001545.2 (gene)
Gene Name: TTTY15
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
741-765
0.032
0
6mer
533-544
0.014
0
6mer
4900-4918
0.010
0
6mer
4296-4300
0.007
0
6mer
1755-1768
0.005
0
XLOC_007880
hsa-miR-299-5p
0.967
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016890
Biotype: transcript isomorph
Gene id: XLOC_007880
Gene Name: XLOC_007880
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
569-580
0.066
0
AC007285.7
hsa-miR-299-5p
0.963
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000433088
Biotype: antisense
Gene id: ENSG00000231519
Gene Name: AC007285.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
405-422
0.060
2
6mer
233-254
0.004
1
RP11-104J23.2
hsa-miR-299-5p
0.959
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000617747
Biotype: lincRNA
Gene id: ENSG00000278690
Gene Name: RP11-104J23.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
99-117
0.037
1
6mer
369-373
0.025
1
XLOC_002100
hsa-miR-299-5p
0.959
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00002752
Biotype: transcript isomorph
Gene id: XLOC_002100
Gene Name: XLOC_002100
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2684-2697
0.039
2
7mer
274-298
0.014
1
6mer
3392-3396
0.003
Not Conserved
6mer
2617-2636
0.003
1
6mer
1966-1982
0.003
2
RP11-494G9.1
hsa-miR-299-5p
0.957
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000617634
Biotype: lincRNA
Gene id: ENSG00000276411
Gene Name: RP11-494G9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
514-525
0.061
1
RP4-614O4.12
hsa-miR-299-5p
0.957
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000594413
Biotype: lincRNA
Gene id: ENSG00000269202
Gene Name: RP4-614O4.12
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
824-829
0.032
1
7mer
1098-1116
0.019
0
7mer
307-330
0.010
Not Conserved
CASC9
hsa-miR-299-5p
0.956
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_103849.1
Biotype: lincRNA
Gene id: NR_103849.1 (gene)
Gene Name: CASC9
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
225-231
0.053
1
6mer
1020-1024
0.008
4
CASC9
hsa-miR-299-5p
0.956
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_103850.1
Biotype: lincRNA
Gene id: NR_103850.1 (gene)
Gene Name: CASC9
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
225-231
0.053
1
6mer
1020-1024
0.008
4
XLOC_013857
hsa-miR-299-5p
0.955
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00029194
Biotype: transcript isomorph
Gene id: XLOC_013857
Gene Name: XLOC_013857
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
121-141
0.060
0
CTD-3105H18.13
hsa-miR-299-5p
0.955
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000563695
Biotype: lincRNA
Gene id: ENSG00000261280
Gene Name: CTD-3105H18.13
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1847-1857
0.034
1
7mer
597-606
0.027
1
LINC00467
hsa-miR-299-5p
0.954
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_026761.2
Biotype: lincRNA
Gene id: NR_026761.2 (gene)
Gene Name: LINC00467
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
720-734
0.040
1
6mer
699-711
0.008
2
6mer
285-289
0.006
1
6mer
291-295
0.006
2
XLOC_010008
hsa-miR-299-5p
0.952
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00021285
Biotype: transcript isomorph
Gene id: XLOC_010008
Gene Name: XLOC_010008
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
95-100
0.056
0
6mer
976-1000
0.004
Not Conserved
RP11-498C9.16
hsa-miR-299-5p
0.948
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000579981
Biotype: lincRNA
Gene id: ENSG00000263859
Gene Name: RP11-498C9.16
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
269-275
0.053
2
6mer
468-483
0.005
1
RP11-406H23.2
hsa-miR-299-5p
0.947
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555257
Biotype: lincRNA
Gene id: ENSG00000259113
Gene Name: RP11-406H23.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
252-265
0.042
1
6mer
106-110
0.006
2
6mer
241-245
0.005
4
6mer
113-130
0.005
2
XLOC_012997
hsa-miR-299-5p
0.947
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026934
Biotype: transcript isomorph
Gene id: XLOC_012997
Gene Name: XLOC_012997
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
537-552
0.047
1
6mer
634-660
0.009
1
6mer
1283-1287
0.003
Not Conserved
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