LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-299-5p


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Gene
miRNA
Score
DIANA Links
RP11-384P7.7
hsa-miR-299-5p
0.830
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000566968
Biotype: lincRNA
Gene id: ENSG00000260947
Gene Name: RP11-384P7.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3492-3506
0.010
2
7mer
3421-3445
0.010
Not Conserved
6mer
3451-3459
0.007
0
6mer
3073-3093
0.005
1
6mer
38-42
0.004
0
LINC00365
hsa-miR-299-5p
0.828
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000413591
Biotype: lincRNA
Gene id: ENSG00000224511
Gene Name: LINC00365
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
467-488
0.016
1
7mer
2085-2090
0.009
2
6mer
199-215
0.007
3
6mer
1973-1977
0.004
3
RP1-20B21.4
hsa-miR-299-5p
0.826
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000439577
Biotype: antisense
Gene id: ENSG00000227751
Gene Name: RP1-20B21.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
81-90
0.036
8
RP1-27K12.2
hsa-miR-299-5p
0.825
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000510846
Biotype: lincRNA
Gene id: ENSG00000231683
Gene Name: RP1-27K12.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
167-175
0.036
1
RP11-124G5.3
hsa-miR-299-5p
0.825
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000531210
Biotype: lincRNA
Gene id: ENSG00000255388
Gene Name: RP11-124G5.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
413-440
0.036
1
RP1-273G13.3
hsa-miR-299-5p
0.824
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521714
Biotype: lincRNA
Gene id: ENSG00000254194
Gene Name: RP1-273G13.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
94-111
0.021
0
7mer
55-73
0.015
0
XLOC_013504
hsa-miR-299-5p
0.824
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00027921
Biotype: transcript isomorph
Gene id: XLOC_013504
Gene Name: XLOC_013504
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
601-609
0.023
0
6mer
368-372
0.013
0
C1orf180
hsa-miR-299-5p
0.823
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000370624
Biotype: lincRNA
Gene id: ENSG00000180869
Gene Name: C1orf180
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
166-180
0.017
1
8mer
1389-1398
0.012
1
6mer
971-989
0.003
1
6mer
725-744
0.003
0
6mer
1765-1785
0.001
0
CTA-929C8.9
hsa-miR-299-5p
0.821
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624278
Biotype: sense_intronic
Gene id: ENSG00000279185
Gene Name: CTA-929C8.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
21950-21960
0.007
1
6mer
24962-24984
0.006
2
7mer
14126-14131
0.004
1
7mer
8924-8933
0.003
1
6mer
22431-22435
0.002
1
6mer
17223-17238
0.002
1
6mer
3554-3571
0.002
1
6mer
6698-6702
0.002
1
6mer
22892-22903
0.002
1
6mer
1912-1935
0.002
1
6mer
20909-20931
0.001
Not Conserved
6mer
19191-19207
0.001
0
6mer
23041-23067
0.001
1
6mer
20642-20653
0.001
Not Conserved
XLOC_011116
hsa-miR-299-5p
0.821
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022339
Biotype: transcript isomorph
Gene id: XLOC_011116
Gene Name: XLOC_011116
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Placenta Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
12-31
0.031
5
6mer
1125-1148
0.004
1
CTD-3195I5.1
hsa-miR-299-5p
0.820
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000571336
Biotype: lincRNA
Gene id: ENSG00000262758
Gene Name: CTD-3195I5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
152-170
0.013
1
6mer
184-199
0.013
5
7mer
1010-1035
0.006
1
6mer
254-272
0.003
Not Conserved
TRAF3IP2-AS1
hsa-miR-299-5p
0.819
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000531702
Biotype: antisense
Gene id: ENSG00000255389
Gene Name: TRAF3IP2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
647-652
0.015
3
7mer
1706-1711
0.014
2
6mer
802-806
0.003
2
6mer
2228-2245
0.003
0
CTD-2368P22.1
hsa-miR-299-5p
0.819
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000546949
Biotype: antisense
Gene id: ENSG00000176593
Gene Name: CTD-2368P22.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1124-1151
0.029
1
6mer
2291-2295
0.006
1
AC106874.1
hsa-miR-299-5p
0.819
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000440495
Biotype: lincRNA
Gene id: ENSG00000228272
Gene Name: AC106874.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
563-572
0.035
1
TRAM2-AS1
hsa-miR-299-5p
0.819
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606714
Biotype: lincRNA
Gene id: ENSG00000225791
Gene Name: TRAM2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2407-2412
0.018
2
7mer
1498-1522
0.010
2
6mer
938-946
0.004
3
6mer
1808-1827
0.004
1
AC006946.16
hsa-miR-299-5p
0.818
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000608373
Biotype: lincRNA
Gene id: ENSG00000273203
Gene Name: AC006946.16
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2475-2497
0.030
1
6mer
1903-1907
0.005
1
XLOC_012630
hsa-miR-299-5p
0.817
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026287
Biotype: transcript isomorph
Gene id: XLOC_012630
Gene Name: XLOC_012630
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
552-569
0.035
0
AP000688.29
hsa-miR-299-5p
0.815
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000422473
Biotype: lincRNA
Gene id: ENSG00000233393
Gene Name: AP000688.29
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2318-2323
0.035
0
XLOC_008420
hsa-miR-299-5p
0.815
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018690
Biotype: transcript isomorph
Gene id: XLOC_008420
Gene Name: XLOC_008420
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
328-333
0.024
1
6mer
1188-1199
0.005
1
6mer
988-1004
0.004
1
6mer
1345-1365
0.002
1
RP11-48F14.1
hsa-miR-299-5p
0.815
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000427914
Biotype: lincRNA
Gene id: ENSG00000224406
Gene Name: RP11-48F14.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
483-505
0.030
0
6mer
997-1022
0.003
3
6mer
1169-1196
0.002
3
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