LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-28-5p


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Gene
miRNA
Score
DIANA Links
RP5-1028L10.1
hsa-miR-28-5p
0.850
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000443008
Biotype: antisense
Gene id: ENSG00000227091
Gene Name: RP5-1028L10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
51-70
0.015
5
7mer
282-303
0.010
7
6mer
763-774
0.008
3
6mer
207-230
0.007
9
RP11-12A16.3
hsa-miR-28-5p
0.849
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000437097
Biotype: antisense
Gene id: ENSG00000227068
Gene Name: RP11-12A16.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
552-575
0.039
1
RP11-408A13.4
hsa-miR-28-5p
0.848
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000610061
Biotype: lincRNA
Gene id: ENSG00000272871
Gene Name: RP11-408A13.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1222-1244
0.031
1
6mer
428-447
0.008
2
TINCR
hsa-miR-28-5p
0.848
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000448587
Biotype: lincRNA
Gene id: ENSG00000223573
Gene Name: TINCR
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
269-288
0.021
2
8mer
3471-3494
0.006
2
8mer
2639-2665
0.004
Not Conserved
6mer
3119-3133
0.003
1
8mer
1797-1817
0.002
1
6mer
2777-2791
0.002
1
XLOC_007324
hsa-miR-28-5p
0.847
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015947
Biotype: transcript isomorph
Gene id: XLOC_007324
Gene Name: XLOC_007324
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1085-1107
0.020
0
6mer
227-247
0.019
1
RP5-1033H22.2
hsa-miR-28-5p
0.846
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000431770
Biotype: antisense
Gene id: ENSG00000224093
Gene Name: RP5-1033H22.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
119-146
0.019
7
7mer
119-133
0.013
10
6mer
170-188
0.006
7
MBNL1-AS1
hsa-miR-28-5p
0.846
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000608395
Biotype: antisense
Gene id: ENSG00000229619
Gene Name: MBNL1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6197-6220
0.012
1
8mer
6367-6386
0.011
1
7mer
408-424
0.009
0
8mer
2991-3009
0.006
1
XLOC_010782
hsa-miR-28-5p
0.846
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022454
Biotype: transcript isomorph
Gene id: XLOC_010782
Gene Name: XLOC_010782
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
266-273
0.027
2
6mer
112-130
0.007
1
6mer
56-81
0.005
1
LINC01422
hsa-miR-28-5p
0.846
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000434868
Biotype: lincRNA
Gene id: ENSG00000223704
Gene Name: LINC01422
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6007-6032
0.034
1
6mer
671-698
0.004
1
RP5-1025A1.3
hsa-miR-28-5p
0.845
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000613001
Biotype: lincRNA
Gene id: ENSG00000275358
Gene Name: RP5-1025A1.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
455-471
0.027
1
7mer
128-153
0.006
Not Conserved
6mer
47-70
0.005
1
RP11-897M7.1
hsa-miR-28-5p
0.844
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000535133
Biotype: lincRNA
Gene id: ENSG00000256209
Gene Name: RP11-897M7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
424-444
0.023
1
8mer
54-70
0.015
1
RP11-1E6.1
hsa-miR-28-5p
0.843
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507388
Biotype: lincRNA
Gene id: ENSG00000250657
Gene Name: RP11-1E6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
460-479
0.019
3
7mer
216-233
0.011
1
6mer
522-534
0.008
4
CTD-2377D24.6
hsa-miR-28-5p
0.842
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000492522
Biotype: lincRNA
Gene id: ENSG00000244649
Gene Name: CTD-2377D24.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
94-111
0.034
0
6mer
201-222
0.004
1
XLOC_014172
hsa-miR-28-5p
0.842
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029529
Biotype: transcript isomorph
Gene id: XLOC_014172
Gene Name: XLOC_014172
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4363-4385
0.021
1
7mer
1850-1872
0.006
0
7mer
4231-4252
0.005
2
6mer
3632-3656
0.002
0
7mer
4012-4033
0.002
0
6mer
3941-3960
0.001
0
6mer
3691-3703
0.001
0
TINCR
hsa-miR-28-5p
0.842
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: NR_027064.1
Biotype: lincRNA
Gene id: NR_027064.1 (gene)
Gene Name: TINCR
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
269-288
0.020
2
8mer
3471-3494
0.007
2
8mer
2639-2665
0.004
Not Conserved
6mer
3119-3133
0.003
1
8mer
1797-1817
0.002
1
6mer
2777-2791
0.002
1
RP11-338C15.5
hsa-miR-28-5p
0.841
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000427949
Biotype: antisense
Gene id: ENSG00000235862
Gene Name: RP11-338C15.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1860-1879
0.010
1
7mer
2143-2164
0.008
1
6mer
1752-1779
0.005
2
6mer
2007-2032
0.004
2
6mer
1593-1597
0.004
2
6mer
505-528
0.003
5
6mer
939-957
0.002
2
6mer
1135-1159
0.002
1
INTS6-AS1
hsa-miR-28-5p
0.841
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000610018
Biotype: antisense
Gene id: ENSG00000236778
Gene Name: INTS6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
334-354
0.038
1
XLOC_013420
hsa-miR-28-5p
0.840
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027431
Biotype: transcript isomorph
Gene id: XLOC_013420
Gene Name: XLOC_013420
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
132-150
0.038
0
XLOC_003861
hsa-miR-28-5p
0.839
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007369
Biotype: transcript isomorph
Gene id: XLOC_003861
Gene Name: XLOC_003861
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
128-154
0.033
1
6mer
926-949
0.005
Not Conserved
RP11-326K13.4
hsa-miR-28-5p
0.839
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000580420
Biotype: antisense
Gene id: ENSG00000263823
Gene Name: RP11-326K13.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
150-164
0.020
10
9mer
1474-1492
0.017
0
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