LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-28-5p


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Gene
miRNA
Score
DIANA Links
CTD-3018O17.3
hsa-miR-28-5p
0.862
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594119
Biotype: retained_intron
Gene id: ENSG00000269834
Gene Name: CTD-3018O17.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2579-2600
0.014
1
7mer
2175-2202
0.007
1
6mer
2303-2327
0.006
1
6mer
2373-2399
0.004
0
6mer
79-99
0.004
0
6mer
1789-1812
0.003
1
6mer
75-99
0.003
0
RP11-473M20.7
hsa-miR-28-5p
0.862
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000573130
Biotype: antisense
Gene id: ENSG00000261971
Gene Name: RP11-473M20.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4226-4247
0.013
1
7mer
4082-4106
0.012
4
6mer
4243-4247
0.004
1
6mer
1181-1199
0.003
3
6mer
2819-2842
0.002
3
7mer
4052-4074
0.002
0
6mer
1603-1617
0.002
2
6mer
2666-2684
0.002
2
6mer
2588-2607
0.001
0
WISP1-OT1
hsa-miR-28-5p
0.862
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000602893
Biotype: sense_intronic
Gene id: ENSG00000270132
Gene Name: WISP1-OT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
286-308
0.033
1
6mer
546-566
0.007
3
RP11-212I21.5
hsa-miR-28-5p
0.861
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000611626
Biotype: lincRNA
Gene id: ENSG00000274508
Gene Name: RP11-212I21.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
118-142
0.022
1
7mer
55-71
0.011
0
6mer
489-509
0.007
1
CTA-941F9.10
hsa-miR-28-5p
0.860
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623075
Biotype: sense_overlapping
Gene id: ENSG00000280383
Gene Name: CTA-941F9.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
331-346
0.006
Not Conserved
7mer
19067-19085
0.006
1
6mer
691-711
0.003
Not Conserved
6mer
13404-13421
0.002
0
6mer
7247-7269
0.002
1
6mer
13187-13204
0.002
3
6mer
10892-10913
0.002
1
6mer
9636-9660
0.002
1
6mer
16503-16519
0.002
2
6mer
4123-4135
0.002
Not Conserved
6mer
5963-5982
0.002
0
6mer
13783-13806
0.002
1
6mer
18339-18363
0.001
1
6mer
11817-11836
0.001
1
6mer
15620-15633
0.001
2
6mer
17488-17508
0.001
0
6mer
10894-10920
0.001
1
6mer
18379-18394
0.001
0
LINC01287
hsa-miR-28-5p
0.859
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000416982
Biotype: lincRNA
Gene id: ENSG00000234722
Gene Name: LINC01287
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
836-860
0.019
0
6mer
1592-1616
0.011
0
6mer
1436-1461
0.007
0
6mer
2259-2286
0.003
Not Conserved
XLOC_005210
hsa-miR-28-5p
0.859
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012441
Biotype: transcript isomorph
Gene id: XLOC_005210
Gene Name: XLOC_005210
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1019-1030
0.020
1
7mer
283-301
0.015
2
6mer
1044-1070
0.006
0
PRNCR1
hsa-miR-28-5p
0.858
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_109833.1
Biotype: lincRNA
Gene id: NR_109833.1 (gene)
Gene Name: PRNCR1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
12315-12337
0.011
2
7mer
457-477
0.007
0
8mer
1795-1817
0.005
1
6mer
11587-11612
0.002
1
6mer
11100-11104
0.002
0
6mer
3825-3852
0.002
1
6mer
6447-6469
0.002
1
6mer
11445-11460
0.002
1
6mer
6825-6845
0.001
1
6mer
6659-6663
0.001
0
6mer
5448-5472
0.001
0
6mer
3993-4016
0.001
1
6mer
6948-6972
0.001
1
6mer
1910-1928
0.001
0
XLOC_000822
hsa-miR-28-5p
0.858
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001484
Biotype: transcript isomorph
Gene id: XLOC_000822
Gene Name: XLOC_000822
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1301-1327
0.025
1
7mer
1214-1233
0.015
3
JAKMIP2-AS1
hsa-miR-28-5p
0.857
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_038902.1
Biotype: antisense
Gene id: NR_038902.1 (gene)
Gene Name: JAKMIP2-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1220-1238
0.038
13
6mer
1395-1415
0.002
3
CTD-2643K12.3
hsa-miR-28-5p
0.857
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000556357
Biotype: lincRNA
Gene id: ENSG00000259724
Gene Name: CTD-2643K12.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
98-121
0.040
2
RP11-686D22.4
hsa-miR-28-5p
0.856
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000592117
Biotype: lincRNA
Gene id: ENSG00000267547
Gene Name: RP11-686D22.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
443-469
0.025
0
7mer
29-49
0.015
0
XLOC_008527
hsa-miR-28-5p
0.855
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018249
Biotype: transcript isomorph
Gene id: XLOC_008527
Gene Name: XLOC_008527
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
692-712
0.014
0
7mer
579-605
0.011
2
6mer
601-618
0.010
4
6mer
665-683
0.005
1
RP11-259K5.1
hsa-miR-28-5p
0.855
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000603982
Biotype: lincRNA
Gene id: ENSG00000271653
Gene Name: RP11-259K5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1176-1190
0.035
0
6mer
741-759
0.003
1
6mer
500-521
0.003
1
XLOC_004858
hsa-miR-28-5p
0.855
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009685
Biotype: transcript isomorph
Gene id: XLOC_004858
Gene Name: XLOC_004858
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
47-69
0.029
4
6mer
65-77
0.005
1
6mer
159-185
0.005
3
RP11-362F19.1
hsa-miR-28-5p
0.853
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000506645
Biotype: lincRNA
Gene id: ENSG00000248810
Gene Name: RP11-362F19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
181-203
0.039
3
RP11-266O8.1
hsa-miR-28-5p
0.852
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000556519
Biotype: lincRNA
Gene id: ENSG00000257060
Gene Name: RP11-266O8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1067-1086
0.018
3
8mer+wobble
327-349
0.009
0
6mer
1075-1090
0.007
4
6mer
706-726
0.005
2
RP11-96K19.4
hsa-miR-28-5p
0.851
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000562952
Biotype: sense_overlapping
Gene id: ENSG00000261654
Gene Name: RP11-96K19.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
316-335
0.020
1
9mer
3749-3764
0.010
0
7mer
1505-1529
0.007
Not Conserved
6mer
1471-1486
0.003
1
AC009506.1
hsa-miR-28-5p
0.851
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000418474
Biotype: antisense
Gene id: ENSG00000224152
Gene Name: AC009506.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1067-1088
0.025
6
6mer
103-123
0.007
4
6mer
724-747
0.005
7
6mer
812-836
0.003
2
AC073325.1
hsa-miR-28-5p
0.850
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000443714
Biotype: lincRNA
Gene id: ENSG00000225537
Gene Name: AC073325.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
52-70
0.032
1
7mer
447-471
0.007
0
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