LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-28-5p


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Gene
miRNA
Score
DIANA Links
RP11-104H15.7
hsa-miR-28-5p
0.880
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000575310
Biotype: processed_transcript
Gene id: ENSG00000262880
Gene Name: RP11-104H15.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
363-380
0.027
9
7mer
664-680
0.011
8
6mer
913-939
0.003
5
6mer
933-949
0.002
5
RP11-56P23.1
hsa-miR-28-5p
0.879
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000391366
Biotype: sense_intronic
Gene id: ENSG00000212670
Gene Name: RP11-56P23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
56-80
0.041
1
6mer
1550-1574
0.002
0
CTD-3193K9.11
hsa-miR-28-5p
0.878
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000613683
Biotype: lincRNA
Gene id: ENSG00000273650
Gene Name: CTD-3193K9.11
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
74-99
0.023
2
6mer
344-367
0.014
5
6mer
277-304
0.007
2
LOC284581
hsa-miR-28-5p
0.878
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_046097.1
Biotype: lincRNA
Gene id: NR_046097.1 (gene)
Gene Name: LOC284581
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
442-463
0.031
0
6mer
1407-1421
0.012
1
XLOC_012735
hsa-miR-28-5p
0.878
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026385
Biotype: transcript isomorph
Gene id: XLOC_012735
Gene Name: XLOC_012735
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
955-981
0.008
1
7mer
825-851
0.008
1
7mer
695-721
0.006
1
7mer
890-916
0.006
0
7mer
629-655
0.006
1
7mer
567-589
0.005
0
7mer
759-785
0.004
Not Conserved
RP11-725P16.2
hsa-miR-28-5p
0.878
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000608279
Biotype: lincRNA
Gene id: ENSG00000272769
Gene Name: RP11-725P16.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1606-1626
0.038
0
6mer
580-607
0.005
1
AC093590.1
hsa-miR-28-5p
0.876
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000419243
Biotype: lincRNA
Gene id: ENSG00000238217
Gene Name: AC093590.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
39-64
0.033
3
7mer
531-554
0.009
1
AC084219.3
hsa-miR-28-5p
0.876
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000591772
Biotype: antisense
Gene id: ENSG00000267163
Gene Name: AC084219.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2072-2090
0.021
1
6mer
2052-2067
0.008
1
6mer
1913-1928
0.007
1
7mer
681-698
0.007
0
CTB-78H18.1
hsa-miR-28-5p
0.876
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000524175
Biotype: lincRNA
Gene id: ENSG00000253110
Gene Name: CTB-78H18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
162-184
0.032
1
7mer
585-607
0.010
1
RP11-603J24.5
hsa-miR-28-5p
0.875
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000549438
Biotype: antisense
Gene id: ENSG00000258317
Gene Name: RP11-603J24.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
127-148
0.016
11
6mer
169-191
0.009
7
6mer
324-343
0.007
7
6mer
683-696
0.006
7
6mer
274-295
0.005
7
CTD-2553L13.10
hsa-miR-28-5p
0.875
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000612269
Biotype: lincRNA
Gene id: ENSG00000274104
Gene Name: CTD-2553L13.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
479-504
0.043
1
RP11-543H12.1
hsa-miR-28-5p
0.875
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000547123
Biotype: antisense
Gene id: ENSG00000258026
Gene Name: RP11-543H12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
210-229
0.038
0
6mer
309-333
0.004
1
MLK7-AS1
hsa-miR-28-5p
0.873
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000423106
Biotype: antisense
Gene id: ENSG00000238133
Gene Name: MLK7-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
523-548
0.042
12
LINC00999
hsa-miR-28-5p
0.872
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_024497.2
Biotype: lincRNA
Gene id: NR_024497.2 (gene)
Gene Name: LINC00999
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4904-4922
0.011
1
7mer
4688-4705
0.006
1
7mer
4937-4954
0.003
0
6mer
898-918
0.003
0
7mer
4301-4317
0.002
0
7mer
1092-1109
0.002
0
7mer
1886-1910
0.002
0
7mer
4399-4416
0.002
0
7mer
1667-1684
0.002
0
7mer
1187-1204
0.002
0
7mer
3523-3540
0.002
Not Conserved
8mer
2292-2308
0.001
Not Conserved
7mer
1339-1365
0.001
Not Conserved
6mer
2376-2389
0.001
0
6mer
3204-3217
0.001
Not Conserved
8mer+wobble
1945-1962
0.000
Not Conserved
XLOC_001916
hsa-miR-28-5p
0.870
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00005041
Biotype: transcript isomorph
Gene id: XLOC_001916
Gene Name: XLOC_001916
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
18-35
0.027
1
8mer
537-554
0.015
1
RP11-496H1.2
hsa-miR-28-5p
0.869
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000608482
Biotype: lincRNA
Gene id: ENSG00000273308
Gene Name: RP11-496H1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
55-80
0.025
1
6mer
164-185
0.013
1
6mer
111-130
0.004
0
AC093642.4
hsa-miR-28-5p
0.865
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000412193
Biotype: lincRNA
Gene id: ENSG00000226423
Gene Name: AC093642.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
40-64
0.014
0
6mer
354-375
0.014
1
7mer
90-114
0.013
0
RP11-115D19.1
hsa-miR-28-5p
0.864
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000612706
Biotype: antisense
Gene id: ENSG00000251095
Gene Name: RP11-115D19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2189-2210
0.026
0
8mer
1158-1175
0.010
1
7mer
1445-1464
0.005
0
PART1
hsa-miR-28-5p
0.864
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_028508.1
Biotype: antisense
Gene id: NR_028508.1 (gene)
Gene Name: PART1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
191-206
0.037
9
6mer
634-656
0.004
2
XLOC_010009
hsa-miR-28-5p
0.863
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020710
Biotype: transcript isomorph
Gene id: XLOC_010009
Gene Name: XLOC_010009
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
506-525
0.041
1
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