LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-28-5p


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Gene
miRNA
Score
DIANA Links
LINC00638
hsa-miR-28-5p
0.893
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555578
Biotype: lincRNA
Gene id: ENSG00000258701
Gene Name: LINC00638
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
301-316
0.039
1
6mer
1165-1184
0.006
1
RP11-132M7.3
hsa-miR-28-5p
0.892
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000586938
Biotype: antisense
Gene id: ENSG00000228290
Gene Name: RP11-132M7.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
174-193
0.045
8
RP11-369C8.1
hsa-miR-28-5p
0.891
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000557602
Biotype: lincRNA
Gene id: ENSG00000258616
Gene Name: RP11-369C8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
302-325
0.045
2
RP1-309I22.2
hsa-miR-28-5p
0.891
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624184
Biotype: sense_overlapping
Gene id: ENSG00000279338
Gene Name: RP1-309I22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
28608-28630
0.004
1
6mer
398-411
0.003
1
6mer
312-330
0.003
2
8mer
27571-27594
0.003
0
6mer
18829-18854
0.003
4
6mer
129-149
0.003
2
6mer
11032-11057
0.002
3
6mer
26826-26841
0.002
1
6mer
6893-6913
0.002
1
6mer
1229-1245
0.002
Not Conserved
6mer
11341-11363
0.002
3
6mer
17007-17023
0.002
1
6mer
25545-25557
0.001
2
6mer
12098-12114
0.001
2
6mer
12719-12733
0.001
0
6mer
21266-21288
0.001
1
6mer
26633-26659
0.001
1
6mer
3905-3925
0.001
0
6mer
13616-13641
0.001
1
6mer
20799-20823
0.001
1
7mer
12114-12139
0.001
1
6mer
25358-25383
0.001
Not Conserved
6mer
23897-23920
0.001
1
6mer
6683-6696
0.001
1
6mer
1326-1349
0.001
1
CTA-929C8.9
hsa-miR-28-5p
0.890
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624278
Biotype: sense_intronic
Gene id: ENSG00000279185
Gene Name: CTA-929C8.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
21547-21572
0.009
1
8mer
306-330
0.006
1
7mer
4739-4766
0.005
2
7mer
14986-14998
0.004
0
8mer
17945-17958
0.004
0
6mer
9623-9642
0.003
1
6mer
15432-15436
0.002
1
6mer
6254-6278
0.002
1
6mer
10188-10211
0.002
1
6mer
21145-21170
0.002
0
6mer
13133-13149
0.001
Not Conserved
6mer
7914-7933
0.001
0
6mer
21247-21259
0.001
1
6mer
5474-5492
0.001
1
6mer
15467-15492
0.001
1
6mer
20431-20451
0.001
Not Conserved
NR2F2-AS1
hsa-miR-28-5p
0.890
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000557863
Biotype: antisense
Gene id: ENSG00000247809
Gene Name: NR2F2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
197-220
0.025
7
8mer
139-161
0.012
4
7mer
476-488
0.008
1
RP11-132M7.3
hsa-miR-28-5p
0.890
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000586398
Biotype: antisense
Gene id: ENSG00000228290
Gene Name: RP11-132M7.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
216-235
0.045
8
LINC01001
hsa-miR-28-5p
0.889
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000526704
Biotype: lincRNA
Gene id: ENSG00000230724
Gene Name: LINC01001
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
115-133
0.011
0
7mer
598-616
0.007
0
7mer
309-326
0.005
0
6mer
2193-2213
0.004
Not Conserved
7mer
2002-2019
0.004
0
7mer
83-100
0.003
Not Conserved
7mer
847-872
0.003
Not Conserved
7mer
815-832
0.002
0
7mer
1065-1082
0.002
Not Conserved
7mer
1907-1924
0.002
Not Conserved
7mer
1746-1772
0.002
Not Conserved
7mer
1424-1450
0.001
Not Conserved
RP11-478P10.1
hsa-miR-28-5p
0.888
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000510444
Biotype: lincRNA
Gene id: ENSG00000249584
Gene Name: RP11-478P10.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3645-3662
0.029
0
7mer
1213-1236
0.012
5
6mer
3087-3112
0.002
0
6mer
1555-1574
0.002
1
RP11-478P10.1
hsa-miR-28-5p
0.888
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_109900.1
Biotype: lincRNA
Gene id: NR_109900.1 (gene)
Gene Name: RP11-478P10.1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3641-3658
0.029
0
7mer
1209-1232
0.012
5
6mer
3083-3108
0.002
0
6mer
1551-1570
0.002
1
RP11-234B24.2
hsa-miR-28-5p
0.887
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000527518
Biotype: lincRNA
Gene id: ENSG00000255474
Gene Name: RP11-234B24.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
107-124
0.023
1
6mer
94-121
0.008
2
6mer
446-466
0.007
2
6mer
1212-1238
0.007
1
XLOC_013274
hsa-miR-28-5p
0.886
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027238
Biotype: transcript isomorph
Gene id: XLOC_013274
Gene Name: XLOC_013274
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2026-2047
0.019
1
6mer
5685-5708
0.009
1
7mer
5553-5574
0.006
0
6mer
5027-5045
0.005
1
6mer
1403-1423
0.003
0
6mer
2735-2753
0.002
0
DLGAP1-AS2
hsa-miR-28-5p
0.885
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000572856
Biotype: antisense
Gene id: ENSG00000262001
Gene Name: DLGAP1-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
31-37
0.038
5
6mer
1513-1532
0.003
1
8mer
1292-1309
0.002
Not Conserved
LINC00652
hsa-miR-28-5p
0.884
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000454749
Biotype: lincRNA
Gene id: ENSG00000179935
Gene Name: LINC00652
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
442-466
0.041
3
6mer
279-297
0.003
0
RP3-496C20.1
hsa-miR-28-5p
0.884
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000569912
Biotype: antisense
Gene id: ENSG00000261202
Gene Name: RP3-496C20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1344-1367
0.016
4
7mer
1294-1307
0.015
7
7mer
414-437
0.008
3
6mer
102-122
0.003
0
6mer
369-388
0.002
2
XLOC_001726
hsa-miR-28-5p
0.882
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003921
Biotype: transcript isomorph
Gene id: XLOC_001726
Gene Name: XLOC_001726
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Ovary Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1234-1258
0.030
3
9mer
1099-1112
0.008
1
6mer
615-625
0.005
1
RP5-1033H22.2
hsa-miR-28-5p
0.881
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000427243
Biotype: antisense
Gene id: ENSG00000224093
Gene Name: RP5-1033H22.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
68-95
0.023
7
7mer
68-82
0.014
10
6mer
119-137
0.006
7
EMX2OS
hsa-miR-28-5p
0.881
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000440007
Biotype: antisense
Gene id: ENSG00000229847
Gene Name: EMX2OS
UCSC graphic:
Expression:
  Cell Line Tissue Category
HREpiC Kidney Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6661-6682
0.008
2
6mer
7035-7058
0.008
5
7mer
5971-5995
0.006
2
8mer
5088-5107
0.006
4
6mer
356-375
0.005
0
6mer
7066-7088
0.004
2
6mer
6628-6646
0.002
1
6mer
5744-5770
0.001
0
6mer
1044-1071
0.001
Not Conserved
6mer
4831-4850
0.001
1
RP5-1033H22.2
hsa-miR-28-5p
0.881
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000417401
Biotype: antisense
Gene id: ENSG00000224093
Gene Name: RP5-1033H22.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
68-95
0.023
7
7mer
68-82
0.014
10
6mer
119-137
0.006
7
XLOC_013703
hsa-miR-28-5p
0.880
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028028
Biotype: transcript isomorph
Gene id: XLOC_013703
Gene Name: XLOC_013703
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1415-1432
0.043
0
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