LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-28-5p


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Gene
miRNA
Score
DIANA Links
XLOC_013669
hsa-miR-28-5p
0.906
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00027881
Biotype: transcript isomorph
Gene id: XLOC_013669
Gene Name: XLOC_013669
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1196-1220
0.027
3
7mer
462-476
0.011
2
6mer
86-105
0.005
1
6mer
82-105
0.003
1
6mer
1033-1051
0.001
0
RP5-1172N10.4
hsa-miR-28-5p
0.906
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000602481
Biotype: sense_intronic
Gene id: ENSG00000269941
Gene Name: RP5-1172N10.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
34-53
0.048
6
XLOC_010769
hsa-miR-28-5p
0.906
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022430
Biotype: transcript isomorph
Gene id: XLOC_010769
Gene Name: XLOC_010769
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Liver Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
152-170
0.014
1
6mer
2498-2516
0.014
1
6mer
2058-2080
0.012
1
6mer
1660-1682
0.008
1
RP11-75N4.2
hsa-miR-28-5p
0.904
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: NR_045216.1
Biotype: antisense
Gene id: NR_045216.1 (gene)
Gene Name: RP11-75N4.2
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
129-141
0.024
2
8mer
1831-1841
0.014
0
6mer
575-592
0.008
7
6mer
419-441
0.002
1
CTC-366B18.2
hsa-miR-28-5p
0.903
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000511329
Biotype: antisense
Gene id: ENSG00000248881
Gene Name: CTC-366B18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
689-705
0.047
1
RP11-75N4.2
hsa-miR-28-5p
0.903
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000583706
Biotype: antisense
Gene id: ENSG00000264859
Gene Name: RP11-75N4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
129-141
0.023
2
8mer
1869-1879
0.014
0
6mer
575-592
0.008
7
6mer
419-441
0.002
1
XLOC_000964
hsa-miR-28-5p
0.903
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001629
Biotype: transcript isomorph
Gene id: XLOC_000964
Gene Name: XLOC_000964
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
222-241
0.025
4
8mer
2517-2544
0.014
2
6mer
975-979
0.003
0
6mer
569-586
0.002
1
6mer
1718-1743
0.002
2
6mer
952-956
0.001
0
RP11-69I8.2
hsa-miR-28-5p
0.903
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000454596
Biotype: lincRNA
Gene id: ENSG00000236673
Gene Name: RP11-69I8.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
290-313
0.027
0
8mer
1778-1799
0.020
0
XLOC_005558
hsa-miR-28-5p
0.901
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012027
Biotype: transcript isomorph
Gene id: XLOC_005558
Gene Name: XLOC_005558
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
333-356
0.047
1
RP11-132M7.3
hsa-miR-28-5p
0.900
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000591225
Biotype: antisense
Gene id: ENSG00000228290
Gene Name: RP11-132M7.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
567-586
0.047
8
FLJ32255
hsa-miR-28-5p
0.899
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_104643.1
Biotype: lincRNA
Gene id: NR_104643.1 (gene)
Gene Name: FLJ32255
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
815-840
0.019
1
6mer
346-362
0.015
1
6mer
52-62
0.009
0
6mer
1115-1137
0.004
0
MCM3AP-AS1
hsa-miR-28-5p
0.898
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000590829
Biotype: antisense
Gene id: ENSG00000215424
Gene Name: MCM3AP-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
61-87
0.022
4
7mer
267-284
0.009
4
7mer
87-101
0.007
1
6mer
275-297
0.004
4
6mer
135-157
0.004
1
XLOC_005332
hsa-miR-28-5p
0.897
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011845
Biotype: transcript isomorph
Gene id: XLOC_005332
Gene Name: XLOC_005332
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1183-1202
0.028
1
7mer
255-274
0.013
0
6mer
348-365
0.005
0
FAM201A
hsa-miR-28-5p
0.897
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_027294.1
Biotype: lincRNA
Gene id: NR_027294.1 (gene)
Gene Name: FAM201A
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
813-833
0.023
1
8mer
392-409
0.007
0
6mer
25-49
0.007
0
6mer
799-816
0.006
1
6mer
653-669
0.004
0
RP11-384K6.6
hsa-miR-28-5p
0.897
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000567913
Biotype: lincRNA
Gene id: ENSG00000260404
Gene Name: RP11-384K6.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4339-4356
0.011
1
7mer
3840-3851
0.004
Not Conserved
6mer
308-330
0.004
1
7mer
3769-3787
0.003
Not Conserved
6mer
1089-1109
0.003
0
7mer
2219-2236
0.002
0
7mer
2433-2458
0.002
0
7mer
1735-1752
0.002
0
7mer
4208-4230
0.002
Not Conserved
6mer
3992-4009
0.002
Not Conserved
7mer
1283-1300
0.002
0
7mer
3006-3023
0.002
Not Conserved
7mer
1530-1556
0.002
0
7mer
4015-4041
0.001
Not Conserved
7mer
3103-3120
0.001
Not Conserved
7mer
3324-3341
0.001
Not Conserved
7mer
1378-1395
0.001
Not Conserved
7mer
1861-1878
0.001
Not Conserved
7mer
3135-3152
0.001
Not Conserved
7mer
2473-2490
0.000
Not Conserved
ERVK3-1
hsa-miR-28-5p
0.896
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000590505
Biotype: retained_intron
Gene id: ENSG00000142396
Gene Name: ERVK3-1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
280-304
0.023
0
7mer
3668-3694
0.020
1
7mer
1972-1993
0.003
Not Conserved
CTD-3193O13.12
hsa-miR-28-5p
0.896
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000539278
Biotype: antisense
Gene id: ENSG00000214248
Gene Name: CTD-3193O13.12
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
396-421
0.010
8
6mer
327-352
0.007
6
6mer
4240-4259
0.006
3
6mer
738-760
0.006
7
8mer
1108-1133
0.005
5
8mer
1201-1213
0.004
6
7mer
1249-1264
0.004
9
6mer
2542-2564
0.002
7
7mer
1279-1303
0.002
1
6mer
1677-1701
0.001
2
RP11-34P13.13
hsa-miR-28-5p
0.895
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000484859
Biotype: antisense
Gene id: ENSG00000241860
Gene Name: RP11-34P13.13
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2002-2019
0.020
1
8mer
4622-4636
0.015
0
6mer
4633-4654
0.007
0
6mer
1884-1900
0.004
1
XLOC_008461
hsa-miR-28-5p
0.895
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00017672
Biotype: transcript isomorph
Gene id: XLOC_008461
Gene Name: XLOC_008461
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5842-5860
0.012
1
7mer
5626-5643
0.008
1
7mer
5875-5892
0.003
0
6mer
1058-1074
0.003
1
7mer
5239-5255
0.003
0
6mer
1836-1856
0.003
0
7mer
2824-2848
0.002
0
8mer
3230-3246
0.002
Not Conserved
7mer
5337-5354
0.002
0
7mer
2605-2622
0.002
0
7mer
4461-4478
0.001
Not Conserved
7mer
2030-2047
0.001
0
7mer
2125-2142
0.001
0
6mer
3314-3327
0.001
0
7mer
2277-2303
0.001
Not Conserved
6mer
4142-4155
0.001
Not Conserved
8mer+wobble
2883-2900
0.000
Not Conserved
LINC00649
hsa-miR-28-5p
0.894
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000427447
Biotype: antisense
Gene id: ENSG00000237945
Gene Name: LINC00649
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
429-447
0.012
0
7mer
866-883
0.009
2
6mer
8271-8291
0.004
4
8mer+mismatch
668-684
0.004
5
6mer
4632-4650
0.003
2
6mer
6576-6596
0.002
1
6mer
6150-6167
0.002
0
6mer
5805-5824
0.002
1
6mer
2622-2641
0.001
1
6mer
4982-5003
0.001
2
6mer
6673-6691
0.001
0
6mer
1006-1024
0.001
0
6mer
7900-7922
0.001
1
6mer
6222-6226
0.001
1
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