LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-28-5p


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Gene
miRNA
Score
DIANA Links
PCAT19
hsa-miR-28-5p
0.928
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594315
Biotype: lincRNA
Gene id: ENSG00000267107
Gene Name: PCAT19
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
900-917
0.053
1
XLOC_008302
hsa-miR-28-5p
0.928
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017581
Biotype: transcript isomorph
Gene id: XLOC_008302
Gene Name: XLOC_008302
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
465-485
0.027
0
6mer
1060-1084
0.014
0
6mer
646-663
0.012
0
XLOC_008301
hsa-miR-28-5p
0.928
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017580
Biotype: transcript isomorph
Gene id: XLOC_008301
Gene Name: XLOC_008301
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
465-485
0.027
0
6mer
1060-1084
0.014
0
6mer
646-663
0.012
0
TTTY4C
hsa-miR-28-5p
0.928
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000456123
Biotype: lincRNA
Gene id: ENSG00000228296
Gene Name: TTTY4C
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
862-882
0.027
0
6mer
263-287
0.014
0
6mer
684-701
0.012
0
LINC00665
hsa-miR-28-5p
0.928
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000449434
Biotype: lincRNA
Gene id: ENSG00000232677
Gene Name: LINC00665
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
79-99
0.029
1
6mer
95-116
0.024
1
AC114776.3
hsa-miR-28-5p
0.928
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000414159
Biotype: lincRNA
Gene id: ENSG00000235881
Gene Name: AC114776.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3096-3117
0.024
1
7mer
2743-2762
0.010
1
6mer
121-134
0.009
0
6mer
3911-3929
0.005
0
6mer
2569-2591
0.005
1
TTTY4B
hsa-miR-28-5p
0.928
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000420149
Biotype: lincRNA
Gene id: ENSG00000235412
Gene Name: TTTY4B
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
465-485
0.027
0
6mer
1060-1084
0.014
0
6mer
646-663
0.012
0
RP11-104H15.10
hsa-miR-28-5p
0.928
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000575331
Biotype: processed_transcript
Gene id: ENSG00000272884
Gene Name: RP11-104H15.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
234-245
0.013
7
8mer
2056-2073
0.011
9
7mer
2357-2373
0.006
8
6mer
480-499
0.006
5
6mer
740-754
0.004
6
8mer
3750-3764
0.004
0
7mer
1733-1757
0.002
1
6mer
2606-2632
0.002
5
6mer
1860-1882
0.001
1
6mer
1678-1682
0.001
0
6mer
2626-2642
0.001
5
AC005324.6
hsa-miR-28-5p
0.927
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000433873
Biotype: antisense
Gene id: ENSG00000233002
Gene Name: AC005324.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
88-104
0.043
1
6mer
226-250
0.009
1
MCM3AP-AS1
hsa-miR-28-5p
0.926
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000421927
Biotype: antisense
Gene id: ENSG00000215424
Gene Name: MCM3AP-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2092-2107
0.023
5
8mer
125-151
0.018
4
7mer
151-165
0.006
1
6mer
199-221
0.003
1
6mer
1397-1417
0.002
1
RP5-1125M8.2
hsa-miR-28-5p
0.925
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000426321
Biotype: antisense
Gene id: ENSG00000229283
Gene Name: RP5-1125M8.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
30-53
0.052
1
ERVH48-1
hsa-miR-28-5p
0.924
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000447535
Biotype: lincRNA
Gene id: ENSG00000233056
Gene Name: ERVH48-1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2545-2565
0.033
0
6mer
471-488
0.010
0
6mer
1354-1366
0.008
0
RP11-161H23.9
hsa-miR-28-5p
0.922
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000553259
Biotype: antisense
Gene id: ENSG00000258334
Gene Name: RP11-161H23.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3464-3483
0.011
6
7mer
2852-2875
0.009
9
8mer
1601-1615
0.007
11
7mer
1733-1755
0.004
8
7mer
3413-3434
0.003
5
6mer
281-293
0.003
1
7mer
996-1015
0.003
2
6mer
3356-3374
0.003
9
6mer
833-851
0.002
4
6mer
883-902
0.002
5
6mer
898-924
0.001
0
7mer
1592-1612
0.001
5
6mer
1700-1721
0.001
8
RP11-586K12.10
hsa-miR-28-5p
0.918
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000570183
Biotype: lincRNA
Gene id: ENSG00000260311
Gene Name: RP11-586K12.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
554-572
0.026
0
6mer
401-410
0.016
0
6mer
1045-1065
0.008
0
RP11-1437A8.4
hsa-miR-28-5p
0.917
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000563960
Biotype: lincRNA
Gene id: ENSG00000260827
Gene Name: RP11-1437A8.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1915-1933
0.026
0
6mer
2077-2086
0.016
0
6mer
1422-1442
0.008
0
AC090044.2
hsa-miR-28-5p
0.917
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000423193
Biotype: lincRNA
Gene id: ENSG00000224239
Gene Name: AC090044.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
427-451
0.034
1
6mer
167-188
0.016
1
RP4-755D9.1
hsa-miR-28-5p
0.915
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000553843
Biotype: antisense
Gene id: ENSG00000258545
Gene Name: RP4-755D9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1195-1218
0.026
1
7mer
488-504
0.007
1
6mer
105-118
0.006
0
6mer
1395-1420
0.004
1
6mer
1779-1804
0.004
0
6mer
181-195
0.003
0
RP11-504P24.8
hsa-miR-28-5p
0.913
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608760
Biotype: lincRNA
Gene id: ENSG00000272645
Gene Name: RP11-504P24.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1809-1826
0.017
1
7mer
206-224
0.010
0
7mer
423-440
0.009
1
7mer
901-923
0.006
0
7mer
710-727
0.004
0
7mer
455-480
0.004
Not Conserved
RNF157-AS1
hsa-miR-28-5p
0.910
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000590137
Biotype: antisense
Gene id: ENSG00000267128
Gene Name: RNF157-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1533-1540
0.020
2
8mer
210-228
0.007
1
6mer
189-214
0.006
4
8mer
1147-1153
0.004
1
6mer
1319-1339
0.004
3
6mer
1120-1143
0.003
2
6mer
1549-1564
0.002
0
6mer
519-537
0.002
1
6mer
1361-1386
0.001
Not Conserved
LINC00570
hsa-miR-28-5p
0.907
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000417473
Biotype: lincRNA
Gene id: ENSG00000224177
Gene Name: LINC00570
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
348-364
0.037
1
7mer
1174-1193
0.011
1
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