LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-28-5p


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Gene
miRNA
Score
DIANA Links
CTA-796E4.5
hsa-miR-28-5p
0.950
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624243
Biotype: lincRNA
Gene id: ENSG00000280065
Gene Name: CTA-796E4.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
47-70
0.014
1
9mer
26859-26876
0.013
2
8mer
21548-21565
0.007
1
7mer
15490-15517
0.004
1
6mer
31339-31365
0.003
0
6mer
10665-10689
0.003
7
8mer
12947-12970
0.003
0
7mer
19910-19932
0.002
1
6mer
22404-22422
0.002
2
6mer
4017-4042
0.002
0
6mer
19460-19485
0.001
1
6mer
8473-8490
0.001
1
6mer
4340-4364
0.001
1
6mer
17541-17559
0.001
1
LINC01061
hsa-miR-28-5p
0.950
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: NR_037596.1
Biotype: lincRNA
Gene id: NR_037596.1 (gene)
Gene Name: LINC01061
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
328-346
0.008
0
7mer
1156-1174
0.007
1
6mer
4613-4633
0.005
0
7mer
3971-3988
0.004
0
7mer
573-590
0.004
0
7mer
4422-4439
0.003
0
7mer
3269-3294
0.003
0
7mer
3487-3504
0.003
0
7mer
2702-2719
0.002
0
6mer
3062-3077
0.002
0
7mer
4167-4193
0.002
Not Conserved
7mer
4327-4344
0.002
Not Conserved
7mer
3845-3862
0.002
0
7mer
2384-2401
0.001
0
7mer
1373-1390
0.001
0
7mer
799-816
0.001
Not Conserved
7mer
2605-2622
0.001
0
6mer
1970-1991
0.001
0
7mer
1874-1885
0.001
0
6mer
1716-1733
0.001
0
7mer
1938-1956
0.001
0
7mer
2573-2590
0.001
0
7mer
1499-1521
0.001
Not Conserved
7mer
3237-3254
0.001
0
7mer
1684-1710
0.001
0
XLOC_013549
hsa-miR-28-5p
0.949
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028198
Biotype: transcript isomorph
Gene id: XLOC_013549
Gene Name: XLOC_013549
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1872-1899
0.007
0
8mer
1989-2008
0.005
Not Conserved
7mer
568-589
0.005
Not Conserved
6mer
1828-1845
0.004
0
6mer
2146-2165
0.004
0
6mer
1724-1747
0.003
0
6mer
1624-1649
0.003
0
6mer
1339-1359
0.003
0
6mer
266-292
0.003
0
6mer
1773-1797
0.002
Not Conserved
6mer
1535-1551
0.002
Not Conserved
6mer
1146-1166
0.002
0
6mer
468-483
0.002
Not Conserved
6mer
616-636
0.002
Not Conserved
6mer
858-878
0.002
Not Conserved
6mer
711-734
0.002
Not Conserved
6mer
953-973
0.001
Not Conserved
6mer
1246-1264
0.001
Not Conserved
6mer
1434-1457
0.001
Not Conserved
6mer
468-487
0.001
Not Conserved
6mer
1048-1071
0.001
Not Conserved
FAM201A
hsa-miR-28-5p
0.946
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000377680
Biotype: antisense
Gene id: ENSG00000204860
Gene Name: FAM201A
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
813-833
0.023
1
6mer
3303-3325
0.011
0
8mer
392-409
0.007
0
6mer
25-49
0.007
0
6mer
799-816
0.007
1
6mer
653-669
0.004
0
RP11-1217F2.15
hsa-miR-28-5p
0.945
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000442649
Biotype: lincRNA
Gene id: ENSG00000234089
Gene Name: RP11-1217F2.15
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
31-43
0.057
1
CTB-25B13.5
hsa-miR-28-5p
0.945
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594262
Biotype: lincRNA
Gene id: ENSG00000268798
Gene Name: CTB-25B13.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
144-158
0.022
0
6mer
16-37
0.018
1
6mer
291-317
0.017
1
XLOC_003221
hsa-miR-28-5p
0.944
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00007239
Biotype: transcript isomorph
Gene id: XLOC_003221
Gene Name: XLOC_003221
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
630-656
0.057
1
RP11-13N13.6
hsa-miR-28-5p
0.943
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000578583
Biotype: antisense
Gene id: ENSG00000265656
Gene Name: RP11-13N13.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
414-438
0.057
2
XLOC_010671
hsa-miR-28-5p
0.942
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00022066
Biotype: transcript isomorph
Gene id: XLOC_010671
Gene Name: XLOC_010671
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
328-350
0.056
0
AF001548.6
hsa-miR-28-5p
0.937
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000577048
Biotype: antisense
Gene id: ENSG00000263065
Gene Name: AF001548.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
522-544
0.040
7
7mer
394-418
0.015
9
RP11-445O3.3
hsa-miR-28-5p
0.937
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000562127
Biotype: lincRNA
Gene id: ENSG00000260763
Gene Name: RP11-445O3.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
588-608
0.022
0
6mer
2345-2364
0.011
0
6mer
1392-1408
0.010
0
6mer
717-740
0.009
0
6mer
1362-1377
0.001
Not Conserved
6mer
1344-1366
0.001
Not Conserved
6mer
1335-1357
0.001
Not Conserved
6mer
1353-1377
0.001
Not Conserved
RP4-669L17.10
hsa-miR-28-5p
0.937
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_028325.1
Biotype: lincRNA
Gene id: NR_028325.1 (gene)
Gene Name: RP4-669L17.10
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4021-4039
0.012
1
7mer
3777-3794
0.007
1
6mer
212-231
0.005
0
7mer
405-422
0.003
0
7mer
4054-4071
0.003
0
7mer
500-517
0.003
0
7mer
1808-1826
0.003
0
8mer
2159-2183
0.003
0
7mer
974-1000
0.003
0
7mer
3389-3405
0.002
0
7mer
2555-2580
0.002
0
7mer
652-678
0.002
Not Conserved
7mer
3487-3504
0.002
0
7mer
1342-1359
0.001
Not Conserved
7mer
1552-1577
0.001
Not Conserved
7mer
1592-1609
0.001
0
6mer
2650-2663
0.001
0
XLOC_010706
hsa-miR-28-5p
0.937
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021520
Biotype: transcript isomorph
Gene id: XLOC_010706
Gene Name: XLOC_010706
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3498-3524
0.041
1
6mer
3618-3637
0.014
1
FAM201A
hsa-miR-28-5p
0.933
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000484285
Biotype: antisense
Gene id: ENSG00000204860
Gene Name: FAM201A
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
824-844
0.022
1
6mer
72-86
0.015
1
8mer
403-420
0.007
0
6mer
810-827
0.006
1
6mer
664-680
0.004
0
XLOC_009222
hsa-miR-28-5p
0.933
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019399
Biotype: transcript isomorph
Gene id: XLOC_009222
Gene Name: XLOC_009222
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
432-448
0.013
0
6mer
5278-5296
0.010
0
6mer
4876-4900
0.008
0
6mer
1683-1696
0.007
0
6mer
2116-2127
0.006
0
6mer
3708-3726
0.005
0
6mer
3383-3403
0.005
0
RP11-495P10.8
hsa-miR-28-5p
0.932
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000434245
Biotype: lincRNA
Gene id: ENSG00000231196
Gene Name: RP11-495P10.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
337-351
0.053
0
C21orf90
hsa-miR-28-5p
0.931
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: NR_026548.1
Biotype: antisense
Gene id: NR_026548.1 (gene)
Gene Name: C21orf90
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
776-798
0.026
0
7mer
407-417
0.018
1
6mer
592-607
0.009
1
AC011738.4
hsa-miR-28-5p
0.930
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000436105
Biotype: antisense
Gene id: ENSG00000231638
Gene Name: AC011738.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
290-310
0.048
12
8mer
1078-1095
0.005
4
XLOC_008332
hsa-miR-28-5p
0.929
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017595
Biotype: transcript isomorph
Gene id: XLOC_008332
Gene Name: XLOC_008332
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
861-881
0.027
0
6mer
262-286
0.014
0
6mer
683-700
0.012
0
TTTY4
hsa-miR-28-5p
0.928
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000436568
Biotype: lincRNA
Gene id: ENSG00000226906
Gene Name: TTTY4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
465-485
0.027
0
6mer
1060-1084
0.014
0
6mer
646-663
0.012
0
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