LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-28-5p


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Gene
miRNA
Score
DIANA Links
XLOC_013771
hsa-miR-28-5p
0.979
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028418
Biotype: transcript isomorph
Gene id: XLOC_013771
Gene Name: XLOC_013771
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
78-98
0.009
1
8mer
308-324
0.008
0
7mer
98-119
0.006
1
6mer
610-632
0.005
1
6mer
901-924
0.003
1
6mer
151-170
0.003
1
6mer
803-820
0.003
1
6mer
512-535
0.003
0
6mer
203-224
0.003
0
6mer
414-437
0.003
0
7mer
4160-4186
0.002
0
7mer
4213-4231
0.002
0
6mer
1097-1103
0.002
1
6mer
1195-1218
0.002
1
7mer
3064-3085
0.001
Not Conserved
7mer
1985-2000
0.001
Not Conserved
7mer
3999-4014
0.001
Not Conserved
7mer
2200-2224
0.001
Not Conserved
6mer
1293-1311
0.001
0
6mer
1391-1414
0.001
0
7mer
1729-1749
0.001
Not Conserved
7mer
2339-2365
0.001
Not Conserved
7mer
3623-3641
0.001
Not Conserved
6mer
1489-1512
0.001
0
6mer
3732-3747
0.001
Not Conserved
6mer
1587-1610
0.001
0
7mer
2833-2852
0.001
Not Conserved
6mer
1883-1904
0.001
Not Conserved
7mer
3225-3249
0.001
Not Conserved
6mer
4108-4126
0.001
Not Conserved
6mer
2445-2469
0.001
Not Conserved
6mer
3378-3393
0.001
Not Conserved
6mer
1685-1703
0.001
0
6mer
2958-2973
0.001
Not Conserved
6mer
2852-2874
0.000
Not Conserved
6mer
3326-3341
0.000
Not Conserved
6mer
3060-3085
0.000
Not Conserved
6mer
3728-3747
0.000
Not Conserved
MIR6818
hsa-miR-28-5p
0.976
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624945
Biotype: antisense
Gene id: ENSG00000279159
Gene Name: MIR6818
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
48746-48769
0.007
9
7mer
49062-49077
0.006
1
7mer
41860-41881
0.004
11
7mer
12997-13008
0.004
0
6mer
37640-37665
0.004
10
7mer
31224-31238
0.003
1
9mer
46568-46583
0.003
1
7mer
12837-12859
0.003
0
6mer
5712-5730
0.003
5
6mer
42703-42718
0.003
7
6mer
40962-40980
0.002
5
6mer
29061-29088
0.002
7
6mer
41604-41622
0.002
6
6mer
9043-9066
0.002
1
6mer
4536-4547
0.002
2
6mer
40636-40662
0.002
9
7mer
5963-5979
0.002
2
6mer
6620-6636
0.002
2
6mer
8565-8587
0.002
1
6mer
22601-22624
0.002
1
6mer
21802-21823
0.002
0
6mer
46280-46297
0.002
1
6mer
1338-1356
0.002
1
6mer
28975-28998
0.001
7
6mer
41971-41988
0.001
3
6mer
34629-34647
0.001
0
6mer
42518-42539
0.001
1
7mer
47392-47415
0.001
1
6mer
29586-29612
0.001
2
6mer
40884-40909
0.001
2
LINC00664
hsa-miR-28-5p
0.975
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596203
Biotype: lincRNA
Gene id: ENSG00000268658
Gene Name: LINC00664
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
547-574
0.040
1
6mer
120-147
0.016
1
6mer
263-283
0.009
0
6mer
474-499
0.006
0
RP3-323A16.1
hsa-miR-28-5p
0.975
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623959
Biotype: antisense
Gene id: ENSG00000279184
Gene Name: RP3-323A16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
36086-36107
0.006
1
8mer
6673-6698
0.004
0
7mer
34093-34102
0.004
0
7mer
45749-45774
0.004
1
6mer
13790-13816
0.003
6
6mer
53510-53531
0.003
1
7mer
42950-42975
0.003
2
7mer
39348-39367
0.003
1
7mer
5810-5829
0.003
0
7mer
1119-1132
0.002
0
6mer
18014-18031
0.002
1
6mer
14416-14442
0.002
2
6mer
809-825
0.002
1
6mer
1716-1725
0.002
2
6mer
52968-52981
0.002
1
6mer
44358-44381
0.002
2
6mer
30103-30129
0.002
1
6mer
1526-1535
0.002
1
6mer
44538-44555
0.001
3
6mer
18650-18673
0.001
1
6mer
7573-7598
0.001
0
7mer
37258-37279
0.001
0
6mer
31461-31476
0.001
Not Conserved
6mer
38222-38244
0.001
Not Conserved
6mer
50130-50143
0.001
2
6mer
1231-1257
0.001
2
6mer
48793-48814
0.001
0
6mer
39949-39966
0.001
1
6mer
16961-16985
0.001
1
6mer
49672-49689
0.001
0
6mer
18054-18068
0.001
0
6mer
37381-37399
0.001
1
6mer
37323-37344
0.001
1
7mer
45766-45786
0.001
3
6mer
44381-44402
0.001
1
6mer
53002-53020
0.001
Not Conserved
6mer
11959-11985
0.001
1
6mer
37389-37407
0.001
1
6mer
37413-37428
0.000
1
6mer
39949-39970
0.000
1
RP11-849H4.4
hsa-miR-28-5p
0.970
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000502284
Biotype: antisense
Gene id: ENSG00000251143
Gene Name: RP11-849H4.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
931-949
0.014
5
6mer
633-655
0.008
7
7mer
377-397
0.007
3
6mer
198-222
0.007
6
6mer
157-180
0.007
9
9mer
2935-2954
0.006
6
6mer
672-697
0.003
5
7mer
651-672
0.003
5
6mer
1086-1110
0.002
8
6mer
1359-1381
0.002
7
8mer+wobble
1233-1254
0.002
6
7mer
1506-1525
0.002
8
6mer
1423-1443
0.001
5
6mer
2986-3007
0.001
5
6mer
1497-1510
0.001
1
RP11-13K12.1
hsa-miR-28-5p
0.970
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000590398
Biotype: lincRNA
Gene id: ENSG00000267506
Gene Name: RP11-13K12.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2358-2379
0.016
0
8mer
274-293
0.014
0
6mer
2152-2176
0.004
1
6mer
98-120
0.003
0
6mer
2043-2060
0.003
1
6mer
2089-2113
0.003
Not Conserved
6mer
1980-1997
0.002
Not Conserved
6mer
1874-1891
0.002
0
6mer
443-460
0.002
Not Conserved
6mer
549-566
0.002
Not Conserved
6mer
602-619
0.002
Not Conserved
6mer
1609-1626
0.002
0
6mer
1768-1785
0.001
Not Conserved
6mer
761-778
0.001
0
6mer
708-725
0.001
Not Conserved
6mer
867-884
0.001
Not Conserved
6mer
1662-1679
0.001
0
6mer
1450-1467
0.001
Not Conserved
6mer
1079-1096
0.001
Not Conserved
6mer
920-937
0.001
Not Conserved
6mer
1503-1520
0.001
Not Conserved
6mer
1238-1255
0.001
Not Conserved
6mer
1291-1308
0.001
Not Conserved
6mer
1132-1149
0.001
Not Conserved
RP11-856M7.6
hsa-miR-28-5p
0.970
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000584734
Biotype: lincRNA
Gene id: ENSG00000266604
Gene Name: RP11-856M7.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
828-839
0.067
0
XLOC_009990
hsa-miR-28-5p
0.968
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020685
Biotype: transcript isomorph
Gene id: XLOC_009990
Gene Name: XLOC_009990
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
83-100
0.027
1
6mer
70-97
0.015
2
6mer
422-442
0.014
2
6mer
1159-1179
0.010
1
PCBP2-OT1
hsa-miR-28-5p
0.966
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: NR_109828.1
Biotype: sense
Gene id: NR_109828.1 (gene)
Gene Name: PCBP2-OT1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
155-181
0.066
8
XLOC_013552
hsa-miR-28-5p
0.965
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028202
Biotype: transcript isomorph
Gene id: XLOC_013552
Gene Name: XLOC_013552
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
325-342
0.004
0
6mer
159-180
0.004
1
7mer
220-238
0.003
0
7mer
538-553
0.003
0
6mer
379-394
0.002
0
6mer
474-500
0.002
0
7mer
1116-1131
0.002
0
7mer
1731-1746
0.002
1
8mer
4934-4959
0.002
0
6mer
746-761
0.002
0
6mer
582-604
0.002
0
7mer
1480-1495
0.002
1
8mer
2560-2576
0.002
Not Conserved
6mer
6036-6060
0.002
3
7mer
2347-2365
0.001
Not Conserved
7mer
2719-2734
0.001
Not Conserved
7mer
3031-3048
0.001
Not Conserved
8mer
4215-4242
0.001
0
7mer
3247-3262
0.001
Not Conserved
6mer
3515-3527
0.001
0
6mer
2085-2101
0.001
0
7mer
4342-4347
0.001
0
7mer
4837-4852
0.001
Not Conserved
6mer
799-814
0.001
0
6mer
3866-3881
0.001
0
6mer
852-867
0.001
0
6mer
5207-5222
0.001
0
6mer
1311-1337
0.001
1
7mer
1533-1548
0.001
1
6mer
4121-4136
0.001
0
6mer
905-920
0.001
0
7mer
2613-2628
0.001
Not Conserved
6mer
4535-4560
0.001
0
6mer
947-973
0.001
0
6mer
1820-1846
0.001
1
7mer
4665-4684
0.001
Not Conserved
6mer
2191-2206
0.001
Not Conserved
6mer
1872-1893
0.001
1
6mer
1375-1390
0.001
0
6mer
3917-3932
0.001
0
6mer
1116-1135
0.001
0
6mer
2775-2787
0.001
Not Conserved
6mer
4650-4665
0.001
Not Conserved
6mer
4374-4400
0.001
0
6mer
3553-3568
0.001
1
6mer
2817-2838
0.000
Not Conserved
6mer
3970-3984
0.000
0
6mer
2876-2890
0.000
Not Conserved
6mer
5248-5272
0.000
0
6mer
1533-1552
0.000
0
XLOC_009650
hsa-miR-28-5p
0.964
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00021051
Biotype: transcript isomorph
Gene id: XLOC_009650
Gene Name: XLOC_009650
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
171-188
0.051
1
6mer
75-99
0.013
1
RP6-191P20.4
hsa-miR-28-5p
0.964
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000430140
Biotype: antisense
Gene id: ENSG00000236064
Gene Name: RP6-191P20.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
127-149
0.061
2
6mer
1364-1378
0.004
2
RP11-216M21.7
hsa-miR-28-5p
0.964
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000450520
Biotype: lincRNA
Gene id: ENSG00000233207
Gene Name: RP11-216M21.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1036-1057
0.026
0
6mer
330-354
0.017
0
6mer
2476-2497
0.015
0
6mer
1027-1031
0.007
0
RP1-71H24.6
hsa-miR-28-5p
0.957
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000614658
Biotype: lincRNA
Gene id: ENSG00000276343
Gene Name: RP1-71H24.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
322-348
0.034
1
6mer
368-383
0.019
1
6mer
168-172
0.008
0
LL22NC03-86G7.1
hsa-miR-28-5p
0.957
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000458178
Biotype: antisense
Gene id: ENSG00000224086
Gene Name: LL22NC03-86G7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
9614-9624
0.006
2
8mer
14240-14261
0.005
1
9mer
18815-18834
0.005
5
7mer
17482-17499
0.005
9
7mer
30449-30465
0.004
8
7mer
1087-1107
0.003
1
7mer
13586-13611
0.003
0
7mer
22236-22254
0.003
1
7mer
17879-17898
0.002
1
7mer
23187-23203
0.002
Not Conserved
8mer
20341-20359
0.002
1
6mer
10391-10415
0.002
1
6mer
3044-3068
0.002
1
6mer
31986-32001
0.002
0
6mer
7352-7369
0.001
0
6mer
26637-26655
0.001
1
7mer
15530-15555
0.001
1
6mer
5198-5218
0.001
1
6mer
12795-12813
0.001
1
6mer
4258-4282
0.001
1
6mer
23741-23764
0.001
0
6mer
15912-15935
0.001
1
6mer
34792-34811
0.001
2
6mer
16117-16142
0.001
1
6mer
32097-32122
0.001
4
6mer
20234-20248
0.001
0
6mer
12588-12613
0.001
1
6mer
35538-35557
0.001
0
6mer
10446-10464
0.001
1
6mer
9215-9232
0.001
0
6mer
17958-17973
0.001
1
6mer
10460-10483
0.000
1
6mer
10405-10419
0.000
1
CTC-559E9.4
hsa-miR-28-5p
0.957
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000590274
Biotype: lincRNA
Gene id: ENSG00000267581
Gene Name: CTC-559E9.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
582-606
0.051
0
7mer
392-413
0.010
Not Conserved
LINC01038
hsa-miR-28-5p
0.955
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000457858
Biotype: lincRNA
Gene id: ENSG00000229011
Gene Name: LINC01038
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
98-121
0.061
5
RP11-13K12.1
hsa-miR-28-5p
0.953
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000591283
Biotype: lincRNA
Gene id: ENSG00000267506
Gene Name: RP11-13K12.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4809-4830
0.017
0
8mer
2725-2744
0.006
0
6mer
4603-4627
0.004
1
6mer
4494-4511
0.003
1
7mer
1988-2009
0.003
0
6mer
4540-4564
0.003
Not Conserved
6mer
4431-4448
0.002
Not Conserved
6mer
725-747
0.002
Not Conserved
6mer
2317-2325
0.002
1
6mer
4325-4342
0.002
0
7mer
1769-1787
0.002
1
6mer
4060-4077
0.001
0
6mer
1415-1441
0.001
1
6mer
4219-4236
0.001
Not Conserved
6mer
4113-4130
0.001
0
6mer
3901-3918
0.001
Not Conserved
6mer
1560-1576
0.001
1
6mer
3530-3547
0.001
Not Conserved
6mer
3689-3706
0.001
Not Conserved
6mer
3954-3971
0.001
Not Conserved
6mer
2894-2911
0.001
Not Conserved
6mer
3742-3759
0.001
Not Conserved
6mer
3000-3017
0.001
Not Conserved
6mer
3318-3335
0.001
Not Conserved
6mer
3159-3176
0.001
Not Conserved
6mer
3212-3229
0.001
0
6mer
3583-3600
0.001
Not Conserved
6mer
3053-3070
0.001
Not Conserved
6mer
3371-3388
0.000
Not Conserved
MCM3AP-AS1
hsa-miR-28-5p
0.951
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000444998
Biotype: antisense
Gene id: ENSG00000215424
Gene Name: MCM3AP-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2005-2020
0.023
5
8mer
38-64
0.023
4
7mer
64-78
0.008
1
6mer
112-134
0.003
1
6mer
1310-1330
0.002
1
MCM3AP-AS1
hsa-miR-28-5p
0.951
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000432735
Biotype: antisense
Gene id: ENSG00000215424
Gene Name: MCM3AP-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
147-173
0.024
4
8mer
2114-2129
0.023
5
7mer
173-187
0.007
1
6mer
221-243
0.003
1
6mer
1419-1439
0.002
1
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