LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-28-5p


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Gene
miRNA
Score
DIANA Links
CTD-2020K17.3
hsa-miR-28-5p
0.839
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000587534
Biotype: antisense
Gene id: ENSG00000233175
Gene Name: CTD-2020K17.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1761-1766
0.009
6
7mer
1911-1927
0.008
4
6mer
448-466
0.005
3
6mer
1650-1669
0.004
5
8mer+wobble
621-638
0.004
2
6mer
839-859
0.003
1
6mer
1480-1504
0.002
4
7mer
1607-1629
0.002
0
CXADRP3
hsa-miR-28-5p
0.839
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000617265
Biotype: lincRNA
Gene id: ENSG00000265766
Gene Name: CXADRP3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
224-247
0.027
2
6mer
101-125
0.006
1
6mer
573-594
0.004
0
RP3-513G18.2
hsa-miR-28-5p
0.838
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000508619
Biotype: lincRNA
Gene id: ENSG00000250632
Gene Name: RP3-513G18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
129-155
0.033
1
6mer
927-950
0.005
Not Conserved
RP11-566H8.1
hsa-miR-28-5p
0.838
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520391
Biotype: lincRNA
Gene id: ENSG00000253275
Gene Name: RP11-566H8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
26-43
0.038
2
CACNA1C-AS1
hsa-miR-28-5p
0.838
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000544517
Biotype: antisense
Gene id: ENSG00000246627
Gene Name: CACNA1C-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
507-527
0.010
9
7mer
100-125
0.008
0
8mer
702-726
0.006
1
7mer
74-99
0.005
1
6mer
50-62
0.005
2
6mer
148-166
0.003
1
LINC01128
hsa-miR-28-5p
0.837
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000445118
Biotype: lincRNA
Gene id: ENSG00000228794
Gene Name: LINC01128
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
6152-6175
0.012
0
7mer
1179-1205
0.011
1
7mer
1407-1425
0.006
0
7mer
3792-3817
0.004
0
6mer
3604-3621
0.002
2
6mer
1848-1866
0.002
1
XLOC_011696
hsa-miR-28-5p
0.837
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024372
Biotype: transcript isomorph
Gene id: XLOC_011696
Gene Name: XLOC_011696
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
79-99
0.023
0
6mer
732-749
0.015
0
RP11-54H7.4
hsa-miR-28-5p
0.837
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000618966
Biotype: lincRNA
Gene id: ENSG00000275216
Gene Name: RP11-54H7.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
398-415
0.030
0
6mer
733-754
0.003
0
6mer
662-686
0.002
0
6mer
2599-2624
0.002
1
XLOC_000917
hsa-miR-28-5p
0.836
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001584
Biotype: transcript isomorph
Gene id: XLOC_000917
Gene Name: XLOC_000917
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
158-182
0.037
4
XLOC_010719
hsa-miR-28-5p
0.836
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00022108
Biotype: transcript isomorph
Gene id: XLOC_010719
Gene Name: XLOC_010719
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
225-245
0.036
1
6mer
3418-3442
0.002
Not Conserved
SMAD5-AS1
hsa-miR-28-5p
0.836
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_026763.1
Biotype: antisense
Gene id: NR_026763.1 (gene)
Gene Name: SMAD5-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1477-1494
0.037
1
LINC01128
hsa-miR-28-5p
0.836
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_047525.1
Biotype: lincRNA
Gene id: NR_047525.1 (gene)
Gene Name: LINC01128
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
6036-6059
0.012
0
7mer
1063-1089
0.010
1
7mer
1291-1309
0.006
0
7mer
3676-3701
0.004
0
6mer
3488-3505
0.002
2
6mer
1732-1750
0.002
1
RP11-212I21.2
hsa-miR-28-5p
0.836
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569037
Biotype: lincRNA
Gene id: ENSG00000260135
Gene Name: RP11-212I21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
198-218
0.037
13
LINC01000
hsa-miR-28-5p
0.836
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_024368.1
Biotype: lincRNA
Gene id: NR_024368.1 (gene)
Gene Name: LINC01000
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
437-457
0.005
0
7mer
4026-4052
0.003
1
7mer
631-648
0.003
1
7mer
2019-2037
0.002
0
7mer
1553-1570
0.002
Not Conserved
7mer
726-743
0.002
0
7mer
878-904
0.002
0
7mer
1194-1211
0.002
0
7mer
7097-7110
0.002
0
7mer
1774-1788
0.002
Not Conserved
7mer
2766-2791
0.002
0
8mer
2370-2394
0.002
Not Conserved
7mer
6217-6230
0.001
0
6mer
5636-5654
0.001
1
6mer
6432-6452
0.001
0
7mer
3403-3419
0.001
0
6mer
6653-6671
0.001
0
6mer
8592-8611
0.001
Not Conserved
8mer+mismatch
6898-6918
0.001
0
7mer
3501-3518
0.001
0
7mer
1803-1820
0.001
0
6mer
6692-6712
0.001
1
6mer
6779-6800
0.000
1
RP11-18J9.3
hsa-miR-28-5p
0.836
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000547033
Biotype: lincRNA
Gene id: ENSG00000258178
Gene Name: RP11-18J9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
75-97
0.034
1
6mer
930-952
0.004
1
SMAD5-AS1
hsa-miR-28-5p
0.836
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000297163
Biotype: antisense
Gene id: ENSG00000164621
Gene Name: SMAD5-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1483-1500
0.037
1
RP11-644K8.1
hsa-miR-28-5p
0.836
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000452342
Biotype: lincRNA
Gene id: ENSG00000223734
Gene Name: RP11-644K8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
531-549
0.037
1
XLOC_007089
hsa-miR-28-5p
0.835
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015015
Biotype: transcript isomorph
Gene id: XLOC_007089
Gene Name: XLOC_007089
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
420-439
0.006
Not Conserved
6mer
3026-3048
0.005
1
7mer
7500-7518
0.005
0
6mer
10485-10500
0.004
0
6mer
4776-4797
0.003
0
8mer
8409-8433
0.002
Not Conserved
6mer
8381-8403
0.002
1
6mer
6963-6979
0.002
0
6mer
4213-4228
0.002
0
6mer
400-421
0.002
Not Conserved
7mer
6877-6897
0.002
0
6mer
3791-3809
0.001
Not Conserved
6mer
6203-6216
0.001
Not Conserved
XLOC_004209
hsa-miR-28-5p
0.835
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008695
Biotype: transcript isomorph
Gene id: XLOC_004209
Gene Name: XLOC_004209
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
773-799
0.026
3
7mer
1643-1662
0.003
0
6mer
2298-2319
0.003
Not Conserved
7mer
2135-2152
0.003
0
6mer
1236-1254
0.003
3
AC091962.3
hsa-miR-28-5p
0.835
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000509568
Biotype: lincRNA
Gene id: ENSG00000251183
Gene Name: AC091962.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
43-69
0.037
4
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